| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_5197 |
|---|
| Symbol | |
|---|
| ID | 4645714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium vanbaalenii PYR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008726 |
|---|
| Strand | - |
|---|
| Start bp | 5561873 |
|---|
| End bp | 5563567 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639808672 |
|---|
| Product | virulence factor Mce family protein |
|---|
| Protein accession | YP_955974 |
|---|
| Protein GI | 120406145 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1463] ABC-type transport system involved in resistance to organic solvents, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00996] virulence factor Mce family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0737049 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.144071 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGATC GCCTGACGCG CCTCCAACTG ATGATCTTCG CGATCGTGAC CGTGCTGAGC
GTGGGTGCGG TGTCGCTGTT CTACCTGCAC GTGCCGTCGG CCGTCGGGAT CGGCGCCTAC
AACGTGACGG CCAACTTCGT AGCGGGCGGC GGCATCTACC AGAACGCCAA CGTGACCTAC
CGCGGCGTCA CCATCGGCCA CGTCAAGTCG GTGGGCCTTT CCGACACCGG CGTGGTGGCG
CACATGCAGT TGAACAGCGG CACACCGGTT CCCGAGAACG TGACCGCGAC GGTCAAAAGC
GTGTCGGCGA TCGGCGAGCA GTACATCGAT CTGGTGCCGC CGCAGGAGGC GTCCGACGCG
ACGCTGCGTG ACGGTTCCGA CATCGGCGTG GATCGCACCG CGATCGGGCA GGACATCGCC
GGCCTGCTGG CCGAAGCCGA GAACCTGGTC CAGAGTGTCA GCAACAGCCG GCTGCAGGAC
CTGCTGAGCG AGACGTTCAA GGCGTTCAAC GGATCCGGGC CCGAACTCGC CCGGCTGATC
CAGTCGTCGC GTCTGCTCGT CGACGAGGCC AACGCGAACT ACCCCGAGGT CTCCCAGCTC
ATCGATCAGG CCGGCCCGTT CCTGGATGCC CAGATCCGCA GCGGTGACGA CATCAGGTCG
CTGGCCGAGG GACTGGGCCG GTTGACGACG GAGGTGGCCG ACGCAGATCC TCAGCTGCGG
ACGACGCTGC AGACGGTGCC GGGTACGGCC GAGGTCGTCA ACGAGACGTT CGACGGGATC
CGGCCGTCCT TCCCGATGCT GGCGGCCAAC CTGGCCAACT TCGGCCGTAT CGGCGTGATC
TACCACAAGT CCCTCGAGCA CGCGCTCGTG GTGTTCCCGG CCTTGCTGGC CGCGCTGAAC
ACGGTGGCGG GCGGGGTGCC GACCGACGAG GGCGGCAAGC TGGACTTCAA GATCCACCTG
CAGGATCCGC CGCCGTGCTC GACCGGCTTC GTGCCGGCCA CGCAGATCCG GTCGCCTGCG
GACACCACCT TGCGCGAACT TCCCACGGAC CTGTACTGCA AGGTCCCGCA GAGTGATCCG
AGTGTGGTGC GCGGCGCGCG CAACTACCCG TGCCAGGAGT TCCCCGGTAA GCGGGCGCCC
ACCGTGCAGC TGTGCCGGGA TCCCCGCGGC TACGTGCCCG TCGGCAACAA CCCGTGGCGC
GGTCCACCCG TCCCGGTCGG CACACCGATC CAGGACGGTC GTAACATTCT GCCGCCCAAC
AAGTTCCCGA TGATCCCGCC GCAGGTCGAT CCGGATCCGG GTCCGCCTTC GGTGCAGTTG
CCACCCGGCG TGGCGCCGGG GCCCGGTCCT GCGCCGCACG CCCCGTTCCC GCTGCCCGTC
CCGCCGAACG AGCAGGGTCC CCCGCCACCG CCGTGGCCGT ACTTCGCGCC GCCCGACCAG
GTGGTCCCGC CGTACGGTCG CCCGCCGCTG GCGCCGCCGC CGGCACCGCC TGCGCCCGCA
CCGGCGCCGG CTGAAGGCAG CCCGGCGCTG CCCGCCGAGG CCCCCTTGGC AAGCGGAACA
TCCGTCGCGA CCTACGATCA GAACGGCAAG TTCGTCGACC CGGCAGGAGG CGTCGGCGTG
TACGCGCCCG GTTCCGACAA GCTGGCGCCT GCGGAGAACT GGGTTGATCT GATGTTGGCG
CCGAAGCAGG TGTAG
|
|---|
| Protein sequence | MLDRLTRLQL MIFAIVTVLS VGAVSLFYLH VPSAVGIGAY NVTANFVAGG GIYQNANVTY
RGVTIGHVKS VGLSDTGVVA HMQLNSGTPV PENVTATVKS VSAIGEQYID LVPPQEASDA
TLRDGSDIGV DRTAIGQDIA GLLAEAENLV QSVSNSRLQD LLSETFKAFN GSGPELARLI
QSSRLLVDEA NANYPEVSQL IDQAGPFLDA QIRSGDDIRS LAEGLGRLTT EVADADPQLR
TTLQTVPGTA EVVNETFDGI RPSFPMLAAN LANFGRIGVI YHKSLEHALV VFPALLAALN
TVAGGVPTDE GGKLDFKIHL QDPPPCSTGF VPATQIRSPA DTTLRELPTD LYCKVPQSDP
SVVRGARNYP CQEFPGKRAP TVQLCRDPRG YVPVGNNPWR GPPVPVGTPI QDGRNILPPN
KFPMIPPQVD PDPGPPSVQL PPGVAPGPGP APHAPFPLPV PPNEQGPPPP PWPYFAPPDQ
VVPPYGRPPL APPPAPPAPA PAPAEGSPAL PAEAPLASGT SVATYDQNGK FVDPAGGVGV
YAPGSDKLAP AENWVDLMLA PKQV
|
|---|
| |