| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_5178 |
|---|
| Symbol | |
|---|
| ID | 4645695 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium vanbaalenii PYR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008726 |
|---|
| Strand | + |
|---|
| Start bp | 5541150 |
|---|
| End bp | 5543408 |
|---|
| Gene Length | 2259 bp |
|---|
| Protein Length | 752 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639808653 |
|---|
| Product | trehalose synthase |
|---|
| Protein accession | YP_955955 |
|---|
| Protein GI | 120406126 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | [TIGR02455] trehalose synthase, Pseudomonas stutzeri type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.365821 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAGTCGG AACCCGAAGA CCAGGGCACT GATTCTTCTG AGTCGCCCGA GCTCACGTTC
GACGAGCACC TGCACCCGGC GCGACCGCGG TCGCTGCGGT TCCGGCCGCG GGTGCGGGCA
CCGTTCACCC GCCGCTCGCT GGCCCGGGAC GGCTCCCCCA CCGGCGACAA CCCCGCTTAC
GTGTCGTGGT TGATCAGCCA GTCGATGCTT GCCGATGCCA ACGAGATCAG CCAGCAGTTC
TCCGGCCAGG GCTCGATGTG GCAGAACCCT TACGCCACAC CGAGCCCGCG CGGCGCGGTC
GAAACGGCGT CGGTGTGGTT CACCGCGTAC CCGCTGTCGC TGATCACCCG GTCCAACGAG
TCTTTCCTCA AGGCGATGGC CGATGTGGAG ATGTGGAAGG CGTTCGCGGA GATCGGGATC
GAGGCGGTGC ACACCGGCCC GGTTAAACGC GCCGGCGGCA TCTCCGGCTG GGAGCTGACC
CCCAGCGTCG ACGGGCACTT CGACCGCATC AGCACCGAGA TCGACCCCGC GTTCGGGACC
GAGGACGAGT TCCGTCAGAT GTGCGGCACC GCGAACTGGT ACGGCGGCAC CATCATCGAC
GACATCGTGC CCGGCCACAC CGGTAAGGGC GCCGACTTCC GGCTCGCCGA GATGAAATAT
GCCGACTACC CCGGCATCTA CCACATGGTC GAGGTCGACC CCCGCGACTG GGAACACCTG
CCCGACGTGC CGCCCGGCGC GGACTCGGTC AACATCGACC CCGCGACCGA GCAGTGGCTC
GACAAGGCCG GCTACATCAT CGGCAAGCTT CAGCGGGTCA TCTTCTATGC CGAGGGCATC
AAGGAGACCA ACTGGAGCGT GACCCGCCCC GTCGTAGGCA TCGACGGTGT CGAACGCCGC
TGGGTGTACC TGCACTACTT CAAGGACGGC CAGCCCTCGA TCAACTGGCT GGACCCGTCC
TTCGCCGGGA TGCGGCTGGT CATCGGCGAC GCGCTGCACT CGCTGACGGA TCTGGGCACC
GGCGGACTCC GCTTGGACGC CAACGGTTTT CTCGGCGCGG AGAAAACCGC GGCCGAGGAC
AGCGCCGCCT GGTCGGAGGG CCACCCGCTC TCGGAAGCGG CCAACCACCT GATCGCCAGC
ATGGTGCGTA AGGTCGGCGG CTTCACCTTC CAGGAGCTCA ACCTCACCAT CGACGACATC
CGCGAGATCG GCGAGGCCGG CGCCGACCTG TCCTACGACT TCATCACCCG CCCGGCCGCC
CACCACGCGC TGGCCACCGC CGACACCGAG TTCCTTCGCC TGACGTTGCG CACCACCCTC
GAGCTCGGCG TGGACCCCGC CTCCCTGGTG CACGCGCTGC AGAATCATGA CGAACTCACC
TACGAACTCG TGCACTGGTC CACCGGCCAC CGCGACGACG TGTACACGTA CAAGGGCGAG
GAGATCACCG GGGAGGTCCT CGGCGAAACG ATCCGCAGCG ACCTGAGCGA GAAGCTGACC
GGCGAGAACG CGCCCTACAA CCTGGTGTTC ACCACCAACG GCATCGCCTG CACCACGGCC
ACCGTCATCG CCGCGACGTT GGGGATCGCC GCGCTGGACG ACATCGTCGA CGACGAGCAG
ATCGACCGGA TCCGCCGCGC CCATCTGCTG CTGGCGATGT TCAACGCATT GCAGCCGGGC
GTGTTTGCGC TGTCGGGATG GGACGTCTGC GGCATGCTGA CGCTGCCGCC GTCGCAGATC
ACCGAACTGC TGCACGGCGG CGACACCCGC TGGATTCACC GTGCCGCCCA CGATCTGATG
GGCGTCAACC CGACCGCTAC CCGGTCCCCA GCCGGAATGC CCAGGGGCCG AAGCCTTTAC
GGCTCCATAC CGGACCAGTT GGCCGAGGAC ACCAGCTTTC TGCGGCAGCT GCAGGCCATC
TTGAAGGTGC GGTCGCACTA CGGCATCGCC ACCAGCCGCC AGATCGACAT CCCCGAGGTG
TCGCACCGCG GCATGCTTGT GCTGGTGCAC CAGCTGCACG AGGAGGGCCG CTACCAGCTG
ACCGTGCTGA ACTTCGCCAA CGAGGACGTC GCGGGCACGG TGCGCTCGTT GAAGCTTCCT
CCGGGCAGTG AGGTGTCGGA CATGTTCTCG GGCAGGCCCC TCGCCACCGT CGACGACCTG
CACAGCTTCG GCGTCGAACT GACCGCGCAT CAAGGCTTGT CACTGCTCGT CGAGGCCCCG
GTGCCCGACG CCGGCACCGA GGGAGACCAC GTCCAGTAG
|
|---|
| Protein sequence | MESEPEDQGT DSSESPELTF DEHLHPARPR SLRFRPRVRA PFTRRSLARD GSPTGDNPAY
VSWLISQSML ADANEISQQF SGQGSMWQNP YATPSPRGAV ETASVWFTAY PLSLITRSNE
SFLKAMADVE MWKAFAEIGI EAVHTGPVKR AGGISGWELT PSVDGHFDRI STEIDPAFGT
EDEFRQMCGT ANWYGGTIID DIVPGHTGKG ADFRLAEMKY ADYPGIYHMV EVDPRDWEHL
PDVPPGADSV NIDPATEQWL DKAGYIIGKL QRVIFYAEGI KETNWSVTRP VVGIDGVERR
WVYLHYFKDG QPSINWLDPS FAGMRLVIGD ALHSLTDLGT GGLRLDANGF LGAEKTAAED
SAAWSEGHPL SEAANHLIAS MVRKVGGFTF QELNLTIDDI REIGEAGADL SYDFITRPAA
HHALATADTE FLRLTLRTTL ELGVDPASLV HALQNHDELT YELVHWSTGH RDDVYTYKGE
EITGEVLGET IRSDLSEKLT GENAPYNLVF TTNGIACTTA TVIAATLGIA ALDDIVDDEQ
IDRIRRAHLL LAMFNALQPG VFALSGWDVC GMLTLPPSQI TELLHGGDTR WIHRAAHDLM
GVNPTATRSP AGMPRGRSLY GSIPDQLAED TSFLRQLQAI LKVRSHYGIA TSRQIDIPEV
SHRGMLVLVH QLHEEGRYQL TVLNFANEDV AGTVRSLKLP PGSEVSDMFS GRPLATVDDL
HSFGVELTAH QGLSLLVEAP VPDAGTEGDH VQ
|
|---|
| |