| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_4954 |
|---|
| Symbol | |
|---|
| ID | 4648939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium vanbaalenii PYR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008726 |
|---|
| Strand | - |
|---|
| Start bp | 5297654 |
|---|
| End bp | 5299375 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639808425 |
|---|
| Product | thiamine pyrophosphate binding domain-containing protein |
|---|
| Protein accession | YP_955732 |
|---|
| Protein GI | 120405903 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.363246 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATGG GTATACCCGT GTACAAACGC ATTCTCGACC TGTTCGAGGC CGAGGGCGTC
AACACGCTGT TCGGCATCCC CGACCCCAAC TTCGTGCACA TGTTCACCGA GGCTGACGCC
CGCGGGTGGT CGGTCGTCGC GCCGCACCAC GAACTCAGCG CCGGCTTCAT GGCCGAGGCC
GCCTCCCGGA TGACCGGCAA CCCGGGCCTG TGCATCGGCA CGCTCGGGCC CGGCGTCGCC
AACATCGCCG GCGCGATGAT GTGTGCACTG GTGGAGAACT CGCCGGTGAT CTTCCTCGGC
GGGCAGCGCG CCCGCATCAC CGAGCGCCGG GTGCGCCGCG GCCGCATCCA GTTCGTGCAG
CAGGAAGGGC TTTTCGCGCC GTCGGTGAAA TACAGCAGCT CCATCGAGTA CGCCGACCAG
ACCGACGAGA TCGTGCACGA GGCCATCCGT CGGGCCATGT CGGGCACCCC CGGCCCGGCC
TACATCGAGT TCCCGTCGCA CGTCATCCTC GACGAGCTCA ACGTGGGGGA GGCGCCGGAG
CCGTCCACCT ACCGTCTGTT GAACCAGGGC GCCGGTGCCC GCGAGGTCGC CGAGGCCGTC
GAGCTGATCC GGCAGGCCGA GCGTCCGATT CTGTTGGTGG GACACGGAGT TCACACGTCA
AGAACCCAGG AGCAGGTCCG CGAGCTGGCC GAGCTGATGG CCTGCCCGGT CATTCAGACC
TCCGGTGGTA CGTCGTTCAT CCCCGGGCTG GAGGACCGCA CCTTCCCGTA CCTGTTCTCG
CCGGCCGCCA ACGAGGCCGT CGAGCAGTCC GACCTGTGCG TGGCGCTGGG CACCGAGCTC
GGTGAACCCA TGCACTACGG ACGCACCCAG CACTGGGCAG GCAACGACGC CAACCGCAAG
TGGGTGTACG TCGAGCAGGA CCCGACCGCG ATCGGCGTGA ACCGGTCGTT CGACGTGCCG
CTCGTCGGCG ATCTGCGCGG GGTGGTGCCG CAGCTCGTCG AGGCGCTGCG GGACACGACG
CGCGCCCCGT CGGCCAATCT GGAGACCCTC GTCGATGCCG ACGCCGCCGA GCTGGCCCGG
GTGGCCGAGG AAGCCCCGAG CGGTCGCACC CCGGTGCACC CGGCCCGCTT CGTCGTCGAG
GCCACGAAGG CTTTCAACGA CTACGCGCAG GACGGCATCC TGGTGCGCGA CGGCGGCGCC
ACCGTGATCT TCCAGTGGAC CTACTCGCAG GCCAAGCCGC GCGACGTGAT CTGGAACCAG
AACTTCGGTC ATCTCGGCAC CGGGCTGCCG TATGCCGTCG GCGCCTCGGT CGCCGAGGGC
CGCACACGTC CGGTCATGCT GCTCACCAGC GACTCGGCGT TCCTGTTCCA CATCGCGGAG
CTGGAGACCG CGGCCAGGGA GAACGTGCCG CTGGTCTGCG TGGTCGGCGT CGACCACCAG
TGGGGACTCG AAGTGGGGGT CTACAAGCGC ACTTTCGAGC AGCCGTCGCC GCAGCCCGGC
GTGCACTGGA GCAAGGACGT GCGGATGGAC AAGATCGCCG AGGGCTTCGG CTGCCACGGC
GAGTACGTCG AGAAGGAGGA CGAGATCGGC CCGGCGATCC AGCGGGCCTA CGCCAGCGGC
AGGACCGCGG TCGTGCACGT CTGCATCGAC CCGAAGGCCA ACTCGGAGGA GATGCCGAAG
TACGACCGAT TCCGCACCTG GTATGCAGAA GGCACCCAGT AG
|
|---|
| Protein sequence | MTMGIPVYKR ILDLFEAEGV NTLFGIPDPN FVHMFTEADA RGWSVVAPHH ELSAGFMAEA
ASRMTGNPGL CIGTLGPGVA NIAGAMMCAL VENSPVIFLG GQRARITERR VRRGRIQFVQ
QEGLFAPSVK YSSSIEYADQ TDEIVHEAIR RAMSGTPGPA YIEFPSHVIL DELNVGEAPE
PSTYRLLNQG AGAREVAEAV ELIRQAERPI LLVGHGVHTS RTQEQVRELA ELMACPVIQT
SGGTSFIPGL EDRTFPYLFS PAANEAVEQS DLCVALGTEL GEPMHYGRTQ HWAGNDANRK
WVYVEQDPTA IGVNRSFDVP LVGDLRGVVP QLVEALRDTT RAPSANLETL VDADAAELAR
VAEEAPSGRT PVHPARFVVE ATKAFNDYAQ DGILVRDGGA TVIFQWTYSQ AKPRDVIWNQ
NFGHLGTGLP YAVGASVAEG RTRPVMLLTS DSAFLFHIAE LETAARENVP LVCVVGVDHQ
WGLEVGVYKR TFEQPSPQPG VHWSKDVRMD KIAEGFGCHG EYVEKEDEIG PAIQRAYASG
RTAVVHVCID PKANSEEMPK YDRFRTWYAE GTQ
|
|---|
| |