| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_4496 |
|---|
| Symbol | |
|---|
| ID | 4645535 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium vanbaalenii PYR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008726 |
|---|
| Strand | - |
|---|
| Start bp | 4831457 |
|---|
| End bp | 4832266 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639807966 |
|---|
| Product | RNA polymerase sigma factor SigE |
|---|
| Protein accession | YP_955277 |
|---|
| Protein GI | 120405448 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.11684 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.283711 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACG GCGCATTCAG CGCACGCCCC GACCACGCGC GTCTCGGGAA CAACATCCCG
ACAGGCCGCG TTGTCGCTTT TGAGCGGTCG TCTCCCAGTG ACCGCACCCA TCTCGAAACG
GAGGATCCGA CGACCACCAC ACAGGCGCCG ACCGCCGCTC CCGTGGCCGC CCCGGTGACC
ATGGCGCACC TTGAGCAGTT CACCGATGCC GCGTGGGTGG AACCGGCAGA TGAGTTGACC
GGCACCGCGG TGTTCGACGC CACCGGTGAC AAGGCCGCGA TGCCGAGCTG GGACGAGCTG
GTCCGTCAGC ACGCAGACCG GGTGTACCGG CTGGCCTACC GCCTGTCCGG CAACCAGCAC
GACGCCGAGG ATCTGACCCA GGAGACGTTC ATCCGCGTCT TCCGGTCGGT GCAGAACTAC
CAGCCGGGGA CCTTCGAAGG CTGGTTGCAC CGCATCACGA CCAACCTGTT CCTCGACATG
GTCCGCCGCC GCGGCCGGAT CCGCATGGAG GCGCTGCCCG AGGATTACGA CCGGGTGCCC
GCCGACGAGC CGAACCCCGA GCAGATCTAC CACGACTCCC GCCTTGGCCC GGACCTTCAG
GCCGCGCTGG ACTCGCTGGC TCCGGAGTTC CGCGCCGCGG TCGTCCTGTG TGACATCGAA
GGCCTCTCCT ACGAGGAGAT CGGCGCCACG CTGGGCGTCA AGCTCGGAAC CGTGCGAAGC
AGGATTCACC GGGGCCGGCA GGCGTTGCGC GAGTACCTGG CACGCCATTC CGACGCCGGC
GCAGGACGGG ACACGGCCAG ATCCGCCTGA
|
|---|
| Protein sequence | MTDGAFSARP DHARLGNNIP TGRVVAFERS SPSDRTHLET EDPTTTTQAP TAAPVAAPVT
MAHLEQFTDA AWVEPADELT GTAVFDATGD KAAMPSWDEL VRQHADRVYR LAYRLSGNQH
DAEDLTQETF IRVFRSVQNY QPGTFEGWLH RITTNLFLDM VRRRGRIRME ALPEDYDRVP
ADEPNPEQIY HDSRLGPDLQ AALDSLAPEF RAAVVLCDIE GLSYEEIGAT LGVKLGTVRS
RIHRGRQALR EYLARHSDAG AGRDTARSA
|
|---|
| |