Gene Mvan_2477 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMvan_2477 
Symbol 
ID4648117 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMycobacterium vanbaalenii PYR-1 
KingdomBacteria 
Replicon accessionNC_008726 
Strand
Start bp2629227 
End bp2631140 
Gene Length1914 bp 
Protein Length637 aa 
Translation table11 
GC content69% 
IMG OID639805960 
Product1-deoxy-D-xylulose-5-phosphate synthase 
Protein accessionYP_953296 
Protein GI120403467 
COG category[H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism 
COG ID[COG1154] Deoxyxylulose-5-phosphate synthase 
TIGRFAM ID[TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.705455 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTGAAC AGATCCGCGG TCCCGCAGAT CTACAGCACC TGTCGCAGGC GCAGCTGGAG 
GACCTGGCCC ACGAAATCCG TGACTTCCTG ATCCACAAAG TCGCGGCCAC AGGTGGGCAC
CTGGGACCCA ACCTCGGCGT GGTCGAACTG ACGTTGGCGC TGCACCGGGT GTTCGACTCG
CCGCACGACC CGATCCTGTT CGACACCGGT CATCAGGCCT ACGTGCACAA GATGCTCACG
GGCCGCTGCC GGGACTTCGA TTCGCTGCGC AAGAAGGACG GCCTGTCCGG TTACCCGTCG
AGCGCCGAGA GCGAGCACGA CTGGATCGAG TCCAGCCACG CCAGCTCGGC GCTGTCCTAC
GCCGACGGGC TGGCGAAGGC CTTCGAGCTG TCCGGCCACC GCAACCGGCA CGTCGTGGCG
GTGGTGGGTG ACGGCGCGTT GACCGGCGGG ATGTGCTGGG AGGCGTTGAA CAACATCGCG
GCGTCGCGCC GGCCTGTGGT GATCGTCGTC AACGACAACG GCCGCAGCTA TGCGCCGACG
ATCGGCGGTT TCGCCGAGCA TCTCGCGGGT CTTCGGTTGC AGCCGGGGTA CGAGCGGGTC
CTCGAGGAGG GCCGCAAGGC AGTCCGCGGT GTCCCGATGA TCGGCGAGTT CTGCTACCAG
TGCATGCACA GCATCAAGGT GGGCATCAAG GACGCGTTGT CGCCGCAGGT GATGTTCACC
GACCTGGGGC TGAAGTACGT GGGTCCGATC GACGGCCACG ACGAGCACGC GGTGGAGAGC
GCGCTGCGCC ACGCGCGGGC CTTCAACGCC CCGGTGGTGG TCCACGTCGT CACGCGCAAG
GGCATGGGGT ATGCGCCCGC CGAGAACGAC GCCGACGACC AGATGCATGC CTGCGGCGTC
ATCGATCCCG AGACCGGTCT GGCCACCTCG GTGCCGGGCC CCGGATGGAC CTCGACGTTC
TCCGAGGCGC TGATCCGGCT GGCCGGCAAG CGTCGCGACA TCGTCGCGAT CACCGCCGCG
ATGCCCGGAC CGACCGGCCT GAGCGCGTTC CGGGACCGCT TCCCGGACCG GTTCTTCGAC
GTCGGCATCG CCGAGCAGCA CGCGATGACG TCGGCGGCCG GCCTGGCGAT GGGCGGGATG
CACCCGGTAG TGGCGATCTA TTCGACGTTC CTCAACCGTG CGTTCGACCA GATGCTCATG
GACGTTGCGC TGCACAAGCT TCCCGTGACG GTGGTGCTGG ACCGGTCGGG TGTCACCGGA
CCCGACGGCG CCAGCCACAA CGGCATGTGG GACCTGTCGA TTCTGGGCAT CGTGCCCGGG
ATGCGGGTCG CCGCACCGCG TGACGGTGCC CGGCTGCGCG AAGAGCTCGG CGAGGCGCTC
GATGTCTCCG ACGGCCCTAC CGCCATCCGC TTCCCGAAAG GTGATGTCGG CGAGGACATC
CCGGCGATCG AGCGGCGCGG CGACGTCGAT GTGCTCGCCG TCCCCGCCGA CGGCATGTCC
GAGGACGTGC TGCTGGTCGC CGTCGGCCCG TTCGCCGCCA TGGCGCTGGC GGTCGCCGAC
CGGTTGCGCA ACCAGGGGAT CGGCGTGACG GTCGTCGACC CGCGCTGGGT GCTGCCGGTT
CCGGAGGAGA TCGCCACGCT GGCCACCAGG CACAAGCTCG TCGTCACCCT CGAAGACAAC
GGCGGCCACG GCGGTGTCGG TTCGGCGGTG TCGGGCGCGT TGCGGCACAA GGAGATCGAC
GTGCCATGCC GCGACGCCGC GTTGCCTCAG GAGTTCTTCG CCCACGCCTC GCGCGGCGAG
GTGTTGGAGT CTGTCGGCCT GACCGAACGC AACATCGCCC GCCAGATCAC CGGCTGGGTG
GCCGCGCTCG GGGCCTCGAC GGGTGACCGT GAGGTCAGCG AGCACGTCGA CTGA
 
Protein sequence
MLEQIRGPAD LQHLSQAQLE DLAHEIRDFL IHKVAATGGH LGPNLGVVEL TLALHRVFDS 
PHDPILFDTG HQAYVHKMLT GRCRDFDSLR KKDGLSGYPS SAESEHDWIE SSHASSALSY
ADGLAKAFEL SGHRNRHVVA VVGDGALTGG MCWEALNNIA ASRRPVVIVV NDNGRSYAPT
IGGFAEHLAG LRLQPGYERV LEEGRKAVRG VPMIGEFCYQ CMHSIKVGIK DALSPQVMFT
DLGLKYVGPI DGHDEHAVES ALRHARAFNA PVVVHVVTRK GMGYAPAEND ADDQMHACGV
IDPETGLATS VPGPGWTSTF SEALIRLAGK RRDIVAITAA MPGPTGLSAF RDRFPDRFFD
VGIAEQHAMT SAAGLAMGGM HPVVAIYSTF LNRAFDQMLM DVALHKLPVT VVLDRSGVTG
PDGASHNGMW DLSILGIVPG MRVAAPRDGA RLREELGEAL DVSDGPTAIR FPKGDVGEDI
PAIERRGDVD VLAVPADGMS EDVLLVAVGP FAAMALAVAD RLRNQGIGVT VVDPRWVLPV
PEEIATLATR HKLVVTLEDN GGHGGVGSAV SGALRHKEID VPCRDAALPQ EFFAHASRGE
VLESVGLTER NIARQITGWV AALGASTGDR EVSEHVD