Gene Mvan_2189 details

Gene Information

• Locus tag: Mvan_2189
• Symbol: rimM
• ID: 4645564
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Mycobacterium vanbaalenii PYR-1
• Kingdom: Bacteria
• Replicon accession: NC_008726
• Strand: +
• Start bp: 2337601
• End bp: 2338119
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 639805674
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_953010
• Protein GI: 120403181
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0264003
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.599871
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGACCTGG TTGTCGGGCG CGTCGTCAAG GCGCACGGCG TCACGGGCGA ACTCGCCGTC 
GACGTCCGCA CCGATGATCC CGAGGGCCGT TTCGTGGCCG GCGCCGTGCT GCGCGGCCGT 
CCCGCGCGGG GCGGCGCCGA GCGCGAGTTC GTCATCGAAT CGGTGAGGTC CCACGGCGAT 
CGGATGCTCA TTCGGCTGCA GGGCGTCGGG GACCGCGATG CCGCCGACGC ACTGCGCGGC 
ACGCTCTTCC TCGTCGATTC CGCCGAGCTT CCCCCGATCG AAGATCCCGA CGAGTTCTAC 
GACCATCAAC TCGAGGGGAT GGCGGTCAGC ACCACCGGCG GGCAGCCCGT CGGTACGGTG 
GCCGAGGTGC TGCACACTGC CGCAGGCGAA CTGCTGGCTG TGCGTGACCC CGACGGCGCC 
GAGGTTCTGG TGCCGTTCGT GTCGGCGATC GTGGTGTCGG TGTCGTTGGC GGACAACGCG 
ATCGAGATCG ATCCGCCCGA GGGTTTGCTC GATCTCTAG 

 

Protein sequence

MDLVVGRVVK AHGVTGELAV DVRTDDPEGR FVAGAVLRGR PARGGAEREF VIESVRSHGD 
RMLIRLQGVG DRDAADALRG TLFLVDSAEL PPIEDPDEFY DHQLEGMAVS TTGGQPVGTV 
AEVLHTAAGE LLAVRDPDGA EVLVPFVSAI VVSVSLADNA IEIDPPEGLL DL