Gene Mvan_2025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMvan_2025 
SymbolligB 
ID4647226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMycobacterium vanbaalenii PYR-1 
KingdomBacteria 
Replicon accessionNC_008726 
Strand
Start bp2165517 
End bp2167121 
Gene Length1605 bp 
Protein Length534 aa 
Translation table11 
GC content72% 
IMG OID639805510 
ProductATP-dependent DNA ligase 
Protein accessionYP_952848 
Protein GI120403019 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase 
TIGRFAM ID[TIGR00574] DNA ligase I, ATP-dependent (dnl1) 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.189008 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.878138 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTGCTGG TTGACGTTGC CAACGCGTCC GCCGACGTCG CGGCCATGTC GGCGCGGCTG 
GCCAAGGTCG CGCGCATCGC CGAGCTGCTG CGCACGGCCG GCCGACAGGG CGACGCGCGG
CTCGTCCGCG TCGTCGTGTC CTGGCTGTCC GGCGAGCTGA CCCAGCGCCA GATCGGTGTC
GGGTGGCGGT CCGTGCGCTC GGTGCCCGAC CCCGCCGCCC AACCGAGCCT CACGGTCGAG
GACGTCGACG CCCGGTTCGG GGAGATCGGG TCCACCTCCG GCAAGGGGTC CCAGGCGCGC
CGCGCGGCAC TGCTGGCTGA ACTCTTCGCT GCGGCCACCG CCGTCGAACA GGTTTTCCTG
CGCCGCCTGC TCACCGGGGA ACTGCGCCAG GGCGCCCTCG GCGGGGTGAT GGCCGACGCG
GTCGGCAAGG CCGCGGGCGT CCCCTCCGCC GTGGTGCGTC GCGCCGCGAT GCTGGGCGGG
GACCTTCCCG CGGTCGCCGC CGCGGCCGTC ACCGACGGCG AGTCCGCCCT CGCACAATTC
ACCCTGCAGG TCGGCAGGCC GGTGGGCCCG ATGCTGGCCC AGACCGCCAC CGGCGTCGCC
GATGCGCTCG ACCGCTTCGG CGGGACGGCG CTGTTCGAGG CCAAGCTGGA CGGCGCGCGC
GTGCAGATCC ACCGCCGCGG CGACGCGGTG TCGGTCTTCA CCCGCAGCCT CGACGACGTG
ACGGCGCGGC TGCCCGAGGT GGTCGACGCG ACGCTGGCGC TGCCGGTCAC GGAGCTGATC
GCCGATGCCG AGGCGATCGC ACTCAGACCC GACGGGCGTC CGCACCGGTT CCAGATCACC
GCCTCACGCT TCGGCCGCCG CGGTGGTACG CCCGACGCGG GTACACAGAG GCTGTCGGTG
TTCTTCTTCG ACCTGCTGCA CGCCGACGGG GTCGACCTGC TCGACCTGCC CACCGGCGAG
CGCATCGCCA CGCTCGACGC GACGGTGCCC CGCGAGCAGC GCGTCGACCG CCTGTTGACC
TCCGACCCGG AGGCCGCGCA GGCGTTTCTC GACGCGACAC TGGCCGCGGG ACACGAAGGC
GTGATGGCCA AGTCGCCGAC CGCACCGTAC GAAGCCGGTC GACGCGGGGC GGGCTGGCTC
AAGGTCAAAC CCGTGCACAC CCTCGACCTG GTGGTGCTCG CCGTGGAATG GGGATCGGGC
CGGCGCACCG GCAAGCTGTC CAATATCCAT CTCGGTGCAC GCGACCCGGC GACCGGCGGT
TTCGTCATGC TCGGCAAGAC GTTCAAGGGC ATGACCGATG AGATGCTGGC CTGGCAGACG
GAACGCTTTC TCGAGTTGGC CGACGGAGCG GCCCCGGCCG CGACAGCAGA CCACGGAGCG
GCCCCGGCCG CGACAGCAGA CCACGGAGCG GCGGATGGAT TCACCGTGAC GGTGCGGCCG
GAGCAGGTCG TCGAGATCGC GTTCGACGGA ATCCAGACGT CCTCGCGTTA CCCCGGTGGG
ATGGCGCTGC GCTTCGCCCG GGTGCTGTGC TACCGCGACG ACAAGACCGC AGCCGAGGCC
GACACCATCG ACACGGTGCG TGCACTGCAC GAACGCGCGA ACTGA
 
Protein sequence
MLLVDVANAS ADVAAMSARL AKVARIAELL RTAGRQGDAR LVRVVVSWLS GELTQRQIGV 
GWRSVRSVPD PAAQPSLTVE DVDARFGEIG STSGKGSQAR RAALLAELFA AATAVEQVFL
RRLLTGELRQ GALGGVMADA VGKAAGVPSA VVRRAAMLGG DLPAVAAAAV TDGESALAQF
TLQVGRPVGP MLAQTATGVA DALDRFGGTA LFEAKLDGAR VQIHRRGDAV SVFTRSLDDV
TARLPEVVDA TLALPVTELI ADAEAIALRP DGRPHRFQIT ASRFGRRGGT PDAGTQRLSV
FFFDLLHADG VDLLDLPTGE RIATLDATVP REQRVDRLLT SDPEAAQAFL DATLAAGHEG
VMAKSPTAPY EAGRRGAGWL KVKPVHTLDL VVLAVEWGSG RRTGKLSNIH LGARDPATGG
FVMLGKTFKG MTDEMLAWQT ERFLELADGA APAATADHGA APAATADHGA ADGFTVTVRP
EQVVEIAFDG IQTSSRYPGG MALRFARVLC YRDDKTAAEA DTIDTVRALH ERAN