| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_1765 |
|---|
| Symbol | |
|---|
| ID | 4647061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium vanbaalenii PYR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008726 |
|---|
| Strand | + |
|---|
| Start bp | 1876439 |
|---|
| End bp | 1878160 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639805253 |
|---|
| Product | choline/carnitine/betaine transporter |
|---|
| Protein accession | YP_952593 |
|---|
| Protein GI | 120402764 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.582743 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACA TCTCCGCGCA CGAGCCGACC GTGATTCCCG CAGTCGACAC CGACGATCCA
ACCATTGAAC CCACCCCGCA CCCAGTGCTC GACATTGCCG TCGAGGAGGA GAGGATCGCC
CGAGCCCGCG GCGTCGACTG GGTGGTGTTC GGTGCCACGG CGGCCATCGC GATCGCCTTC
CTAGTGTGGG GTTTCCGCAG CACCGACACT CTCGCCAGCA CCTCCAGCGC CGCGCTGGCC
TGGGTGATGG ACAACACCGG ATGGCTTTTC GTGCTCACCA GCACCGGCTT CGTGGTGTTC
GTGCTGTATC TGGCGCTCGG CCGGTACGGC ACCATCCCGC TGGGCCGCGA CGACGAAAGC
CCTGAGTTCA ACGGGATTTC CTGGGTGGCG ATGATGTTCA GCGCCGGCAT GGGCATCGGC
CTGATGTTCT TCGGGGTGGC CGAACCGCTG TCGCATTTCA CCACCCCGCC GCCGGGCACC
GGCGCCGAAG GCAACCCCGA CGCCGTGCAG AATGCGATGG CCACCACCCT GTTCCACTGG
ACCCTGCACC CGTGGGCGAT CTACGCCGTC GTCGGCCTGG CCATCGCCTA CGGCGTCTAC
CGCAAGGGTC GGTTACAGCT GATCAGTTCC GCGTTCGAGC CGCTGATTGG GTCCAGAGTA
AACGGACCGT GGGGCAAGGT CATCGACATG CTGGCGATCT TCGCCACACT TTTCGGCTCG
GCAGCCTCAC TTGGCCTGGG CGCGTTGCAG ATCCGCAGCG GTCTGCAGAT CGTCGGCGGC
GTCGGCGAAA CGGGCAACGC GATCCTTGTC GTCATCATCA CCGTGTTGAC GGTGTGTTTC
GTGTTGTCCG CGGTGTCCGG GGTGGCCCGC GGGATCCAGT GGTTGTCCAA CATCAACATG
GTGCTCGCAG TGATGCTGGC GTTGTTCGTG TTCGTCGTCG GCCCAACGGT TTTCATACTC
AACCTGCTGC CGACCACGAT GGGCAGCTAC TTCGCCGACC TCAGCATGAT GTCGGCGCGC
ACCGGCGCCG AGGGCGCCGA CGTCAACGTC TGGCTGCAGT CCTGGACGAT CTTCTACTGG
GCGTGGTGGG TGTCGTGGAC GCCGTTCGTC GGGATGTTCA TCGCGCGGAT CTCACGCGGC
CGCACCATCC GTCAGTTCGT CGCCGGTGTG CTGCTGGTTC CGAGCCTGGT GTCGCTGATC
TGGTTCGCGG TGTTCGGCGG CTCGGCGATA AACCTGCAGC AGAACGGCAC CGACCTGGCG
GGCGAGGGTG GTGTGGAGGA GCAGTTGTTC ACCCTGCTCG ACCGATATCC GATTGCGACG
GTCACCAGCG TGATCGTCAT CGTCCTGGTC GCAATCTTCT TCGTTTCCGG TGCCGACGCC
GCATCGGTCG TGATGGGTTC GCTGTCGCAG CAGGGCACCA TCAAACCCAG CCGCGGCATC
GTCGTCTTTT GGGGGACGGC CACCGGCGCG GTTGCCGCGG TCATGCTGCT CGTCGGCGGC
GCGGACGCCC TGACCGGACT GCAGACCATT ACGATCGTCG CGGCGCTGCC GTTCGTGCTG
GTGATGGTCG GACTGGCGGT GGCACTGGTG AAAGATCTGC GTCGCGACCC GAAGGTGGTG
CGTCGGCAAT ACGCCGCCGA GGCCGTCAAC AGCGCGGTGA TCGCCGGGGT CACCCGGCAC
GGTGATGATT TCGTCATCGC CGTCGAGAAG CACTCGAGGT GA
|
|---|
| Protein sequence | MADISAHEPT VIPAVDTDDP TIEPTPHPVL DIAVEEERIA RARGVDWVVF GATAAIAIAF
LVWGFRSTDT LASTSSAALA WVMDNTGWLF VLTSTGFVVF VLYLALGRYG TIPLGRDDES
PEFNGISWVA MMFSAGMGIG LMFFGVAEPL SHFTTPPPGT GAEGNPDAVQ NAMATTLFHW
TLHPWAIYAV VGLAIAYGVY RKGRLQLISS AFEPLIGSRV NGPWGKVIDM LAIFATLFGS
AASLGLGALQ IRSGLQIVGG VGETGNAILV VIITVLTVCF VLSAVSGVAR GIQWLSNINM
VLAVMLALFV FVVGPTVFIL NLLPTTMGSY FADLSMMSAR TGAEGADVNV WLQSWTIFYW
AWWVSWTPFV GMFIARISRG RTIRQFVAGV LLVPSLVSLI WFAVFGGSAI NLQQNGTDLA
GEGGVEEQLF TLLDRYPIAT VTSVIVIVLV AIFFVSGADA ASVVMGSLSQ QGTIKPSRGI
VVFWGTATGA VAAVMLLVGG ADALTGLQTI TIVAALPFVL VMVGLAVALV KDLRRDPKVV
RRQYAAEAVN SAVIAGVTRH GDDFVIAVEK HSR
|
|---|
| |