| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_0523 |
|---|
| Symbol | |
|---|
| ID | 4644848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium vanbaalenii PYR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008726 |
|---|
| Strand | + |
|---|
| Start bp | 565005 |
|---|
| End bp | 566465 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639804028 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_951373 |
|---|
| Protein GI | 120401544 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.296583 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATGAAA CTGTTGTCGA ACGACTGAGC CGCCGGCACA AGGCCTTCGT CCTGGCGTCC
TGCTGCCTGA GCGTGCTCAT TGTGTCGATC GACGTGACCA TCGCCAACGT TGCAATCCCG
AGCATCCGCG CCGACCTTTC GGCGTCGCCT TCGCAAATGC AGTGGGTCAT TGACATCTAC
ACCTTGATGG TGGCCTCGCT ATTGCTGCTC TCGGGTGCCA TGGCCGACCG ATTCGGTCGG
CGGCGTACGT TGCAGATCGG GTTGACAATC TTTGCGTCGG CCTCCCTACT GTGCAGCGTG
GCTCCCAACG TCGAAACGCT GATCGGCGCC CGCTTCCTGC AGGCGATCGG CGGTTCGATG
CTCACTCCTG CTGGGTTGTC GATCGTCACG CAGGTGTTCA CCGGCAGAGT GGAGCGCGCG
CGCGTCATCG GCATATGGGG GGGCGTCGTA GGCATCTCGA TGGCCTTGGG TCCGATCATG
GGCGGAATAC TTCTCGAGTA TGTTGACTGG CGAGCAGTGT TCTGGATCAA CGTGCCGATC
TGCGCGCTTG CGGTGCTGTT GACCGCGATC TTCGTTCCCG AATCCAAGTC GGTCACCATG
CGCCACGTCG ACCTGATCGG CTTGGTCCTG GGCATGGCCT TCCTGTTCGG ACTGGTGTTC
GTGCTCATCG AAGGGCCAGG GATGGGCTGG ACCGACACCC GCGTCGTCGT TAGCTGTTGC
CTCGCAGCGC TGGCCTTCGC GACATTCCTG CGCTACGAGT CACGCCGCCT CGACCCGTTC
GTCGAGCTCC GATTCTTCCG CAGCATCCCG TTTGCTTCGG CGACGGCCAT CGCGGTGTGC
GCATTCGCTG CATGGGGCGC GTTCCTGTTC ATGATGTCAA TCTATTTGCA AGGGGAGCGC
GGGCTTTCAG CGGTGAACAC CGGGCTGATG TTTCTGCCCG TGGCCGTCGG CGCATTCATC
TTCTCGCCCT TGTCTGGCCG GCTGGTGGGG CGATTTGGTG CCAGACCGTC GCTGATGATC
GCCGGCGCAT TGATCGTCGC CGCGACTCTC ATGTTCGCGC AGATGAGCGA CGCTACCCCG
CAATGGCAAA TGCTGGTCGC CTTTGCGGTT TTCGGCGTCG GTACTTCGAT GGTGAACGCA
CCGGTCACAA CCGCGGCCGT CAGCGGTATG CCGACCGACC GCGCCGGTGC GGCGGCGGCT
ATCACATCCA CGAGCCGACA GGTGGGCGTC GCCATCGGTG TGGCCATATG CGGCCCGGTC
GCTGGTGCGG CATTGGGCGA CACCAACGTC GATTTCGCGG TCTCCGCCCA GCCCCTATGG
CTAGTGTTCG CTGGAGTTGG TGTGCTGATC TTCACGCTCG GTGTCTACTC GACGTCGAAG
CGCGCGCTGC GCTCAGCAGA GCATCTGGCG CCGCTGATCG CAGGAACCGA TCCGCGACGG
GAGGCTGCCG ATGTCGCGTA A
|
|---|
| Protein sequence | MNETVVERLS RRHKAFVLAS CCLSVLIVSI DVTIANVAIP SIRADLSASP SQMQWVIDIY
TLMVASLLLL SGAMADRFGR RRTLQIGLTI FASASLLCSV APNVETLIGA RFLQAIGGSM
LTPAGLSIVT QVFTGRVERA RVIGIWGGVV GISMALGPIM GGILLEYVDW RAVFWINVPI
CALAVLLTAI FVPESKSVTM RHVDLIGLVL GMAFLFGLVF VLIEGPGMGW TDTRVVVSCC
LAALAFATFL RYESRRLDPF VELRFFRSIP FASATAIAVC AFAAWGAFLF MMSIYLQGER
GLSAVNTGLM FLPVAVGAFI FSPLSGRLVG RFGARPSLMI AGALIVAATL MFAQMSDATP
QWQMLVAFAV FGVGTSMVNA PVTTAAVSGM PTDRAGAAAA ITSTSRQVGV AIGVAICGPV
AGAALGDTNV DFAVSAQPLW LVFAGVGVLI FTLGVYSTSK RALRSAEHLA PLIAGTDPRR
EAADVA
|
|---|
| |