| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3545 |
|---|
| Symbol | |
|---|
| ID | 4625259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 4362826 |
|---|
| End bp | 4363392 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 639798661 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_944827 |
|---|
| Protein GI | 119947147 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.940799 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTTT TTTTAAATAA GTTGTATCAC GGAGCAGGGA TTTTATCCGC CGTATGTATC
GTCGCCATAT GTGTTGTGAT TCTAGCTCGC GTGGTCGGAC GCTGGATGGG AATTGTTGTC
CCCTCAAGTG ATGACTTTGC CGGTTTTTTG CTGGCAGCTT CAAGTTTTAT GGCCTTAGCT
TATACATTTC AGCACGGTGG TCATATTCGA GTGAGCTTAT TTACTTCACG ATTAGGTGAG
AAAAGTGCAC TTTTTTGTGA GCGTTTTGTC CTGCTCAGCG CGTCTGTTCT AAGCGCATAT
TTAGCCTACG AGCTTTGTTA TATGGTATGG GAATCCTGGG ATTATGAGGA GGTTTCATCG
GGTTTTGTGG CCATTCCGAT GTGGATTGTT CAACTTCCTG TTGCCATTGG CATGGTTATA
TTTGCTATCT CGGTCATTGA CCTGACCGTA TGTAGTCTTC TCTTTGGTAA ACGAATTCCA
CTTTCTGAAG AGGAATCGCT GGCTGAAAAA GATTTTATTA ATATTGACGG TGTAAAACAT
CAGGATTCAA AGGGAGAGAG TCAATGA
|
|---|
| Protein sequence | MRFFLNKLYH GAGILSAVCI VAICVVILAR VVGRWMGIVV PSSDDFAGFL LAASSFMALA
YTFQHGGHIR VSLFTSRLGE KSALFCERFV LLSASVLSAY LAYELCYMVW ESWDYEEVSS
GFVAIPMWIV QLPVAIGMVI FAISVIDLTV CSLLFGKRIP LSEEESLAEK DFINIDGVKH
QDSKGESQ
|
|---|
| |