Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_3500 |
Symbol | rpsD |
ID | 4625534 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | - |
Start bp | 4331012 |
End bp | 4331632 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 639798616 |
Product | 30S ribosomal protein S4 |
Protein accession | YP_944782 |
Protein GI | 119947102 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0522] Ribosomal protein S4 and related proteins |
TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0101758 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000000843675 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGCAAGAT ATTTAGGTCC TAAGCTAAAG CTTAGCCGTC GCGAAGGAAC AGATCTTTTC TTAAAATCTG GCGTCCGTGC GATTGAATCT AAGTGTAAAA TCGATAATGC ACCCGGTGTT CACGGTGCAC GTAAACCGCG TCTGTCGGAT TACGGTTTGC AATTACGCGA AAAACAAAAA GTACGTCGTA TGTACGGTGT GCTTGAAAAG CAATTCCGTA ACTACTACAA AGAATCTGCA CGTTTACAAG GCAATACGGG TGAAAACCTG CTTCAATTAC TTGAAGGTCG TTTAGACAAT GTTGTTTATC GTATGGGTTT TGGTGCAACA CGCGCCGAGT CTCGTCAACT AGTCAGCCAT AAAGCTGTAT TGGTCAACGG TAAAGTTGTA AATATTCCTT CTTTTAACGT TAAAGCAAGT GATGTTATCG CAATTCGTGA AAAAGCTAAA AAGCAATCAC GCATTGGCGC AGCACTTGAA ATCGCCGGTC AACGTGAAGT CCCAACTTGG GTTTCTGTTG ATGCAACGAA GATGGAAGGC ATATTTACTC GTCAACCTGA ACGTTCAGAT TTATCTGCTG AGATTAACGA ACAGTTAATC ATTGAACTTT ACTCTAAGTA A
|
Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIES KCKIDNAPGV HGARKPRLSD YGLQLREKQK VRRMYGVLEK QFRNYYKESA RLQGNTGENL LQLLEGRLDN VVYRMGFGAT RAESRQLVSH KAVLVNGKVV NIPSFNVKAS DVIAIREKAK KQSRIGAALE IAGQREVPTW VSVDATKMEG IFTRQPERSD LSAEINEQLI IELYSK
|
| |