Gene Ping_3500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_3500 
SymbolrpsD 
ID4625534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp4331012 
End bp4331632 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content42% 
IMG OID639798616 
Product30S ribosomal protein S4 
Protein accessionYP_944782 
Protein GI119947102 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0522] Ribosomal protein S4 and related proteins 
TIGRFAM ID[TIGR01017] ribosomal protein S4, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0101758 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000843675 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAAGAT ATTTAGGTCC TAAGCTAAAG CTTAGCCGTC GCGAAGGAAC AGATCTTTTC 
TTAAAATCTG GCGTCCGTGC GATTGAATCT AAGTGTAAAA TCGATAATGC ACCCGGTGTT
CACGGTGCAC GTAAACCGCG TCTGTCGGAT TACGGTTTGC AATTACGCGA AAAACAAAAA
GTACGTCGTA TGTACGGTGT GCTTGAAAAG CAATTCCGTA ACTACTACAA AGAATCTGCA
CGTTTACAAG GCAATACGGG TGAAAACCTG CTTCAATTAC TTGAAGGTCG TTTAGACAAT
GTTGTTTATC GTATGGGTTT TGGTGCAACA CGCGCCGAGT CTCGTCAACT AGTCAGCCAT
AAAGCTGTAT TGGTCAACGG TAAAGTTGTA AATATTCCTT CTTTTAACGT TAAAGCAAGT
GATGTTATCG CAATTCGTGA AAAAGCTAAA AAGCAATCAC GCATTGGCGC AGCACTTGAA
ATCGCCGGTC AACGTGAAGT CCCAACTTGG GTTTCTGTTG ATGCAACGAA GATGGAAGGC
ATATTTACTC GTCAACCTGA ACGTTCAGAT TTATCTGCTG AGATTAACGA ACAGTTAATC
ATTGAACTTT ACTCTAAGTA A
 
Protein sequence
MARYLGPKLK LSRREGTDLF LKSGVRAIES KCKIDNAPGV HGARKPRLSD YGLQLREKQK 
VRRMYGVLEK QFRNYYKESA RLQGNTGENL LQLLEGRLDN VVYRMGFGAT RAESRQLVSH
KAVLVNGKVV NIPSFNVKAS DVIAIREKAK KQSRIGAALE IAGQREVPTW VSVDATKMEG
IFTRQPERSD LSAEINEQLI IELYSK