| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3473 |
|---|
| Symbol | |
|---|
| ID | 4625546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 4293654 |
|---|
| End bp | 4295663 |
|---|
| Gene Length | 2010 bp |
|---|
| Protein Length | 669 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639798589 |
|---|
| Product | ATP-dependent DNA helicase Rep |
|---|
| Protein accession | YP_944755 |
|---|
| Protein GI | 119947075 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01074] ATP-dependent DNA helicase Rep |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.406551 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTTA ATCCCGGACA AGATGCCGCC GTTAAAATGA TCTCAGGCCC CTGCCTTGTT
TTAGCGGGCG CGGGTAGCGG TAAAACGCGT GTGATCACCA ATAAAATTGC TCACCTGATC
CAAAATTGTG ATTATCTGGC CAAAAATATT GCCGCAGTGA CCTTTACCAA TAAAGCGGCT
CGCGAGATGA AAGAGCGGGT TAGTCAAACG CTGGGTCGTA AAGAGGCGCG CGGTTTAATC
GTCTCAACCT TTCACTCATT AGGCTTGGAT ATTATCAAAC GTGAAGTAAA AACGCTGGGC
ATGAAAACCG GTTTTACCTT GTTCGATGGT CAGGATACTC TGGCATTATT AAAGGAGCTC
ACTGAAAAGC AGCTAAAAGA AGATAAGGAT TTGCTTAAAG CCTTAATGTC GCAAATTTCC
AATTGGAAAA ATGCCTTAGT ATTACCCCCG CAGGCGATAA AGCAGGCGAA AGGTGAACGG
GAGGTCATAT TTGCCCATTG TTATGACCTT TATCAGCGCC AGTTAAAAGC CTATAACGCC
TTGGATTTTG ACGATTTGAT CGTCTTGCCT ACGCTGTTGT TAACGCACAA AGAAGAAGTG
CGTTTACGCT GGCAGAAAAG AATTCGCTAT CTGCTGGTGG ATGAATATCA GGATACTAAT
ACCAGCCAGT ATGAATTAAT TAAAGCCTTA GTGGGAGAGC GTGCTCGCTT TACCGTAGTG
GGTGATGATG ACCAGTCTAT CTATTCATGG CGTGGTGCTC GTCCGGAAAA TTTACTGCTG
TTACAAAAAG ATTTTCCGCA GTTAAAAGTG GTAAAACTCG AGCAGAATTA TCGCTCCAGT
CAGCGTGTAT TAAAATCAGC TAATGTCTTA ATTGCCAATA ACCCGCATGA ATTTGAAAAA
CGTTTATTCA GTGAATTAGG CTATGGTGAT GCCTTAAAAG TCCTGTTCGC AAATAATGAA
CAACATGAGG CGGAGCGGGT GGTGATGGAG CTTTCTGGAC ATAAGTTTAT GAATGGGTGC
TCCTTTAAAG ATTATGCGGT GCTCTATCGG GGCAATCATC AAAGCCGTTT ATTAGAAAAG
GTCATGATGG CAAACCGCAT TCCCTATCGT ATTAGCGGGG GAACCTCTTT TTTTGCGCGC
AGTGAAGTGA AAGACATTAT GGCTTACCTT AAATTATTGG TGAATCATGA AGATGATAAT
GCTTTTTTGC GTATTGTGAA TACACCGCGC CGCGGTATTG GCCCGACCTC TCTGGAAAAA
TTGGGCAGTT ACGCCAATAT GCGCCACAGT CGTTTGTTTA CCTGCAGTTT TGAAATGGGT
TTAGAGCAGA CGTTAACTGG TAAAGGGTTA CAGTCACTGC GGGCTTTCAC GCGCTGGTTG
GTGGATCTTA ATGACCGCCT TAAACGTGAT CCGGCGATTG ATGTTGTCCG TGATTTAATT
CGTGATATCG GTTATGAAGA CTGGTTATAT GAAAGCAGCC CCAGCCCTAA AGCCGCTGAA
ATGGGCATGA AAAATGTGTC GACATTATTT AAATGGGTTA CGGAAATGCT TAAAGGGGAT
GATCTTGATG AGGAAATGAC TCTGGAGCAG GTTGTTGCCC GTTTAACACT GCGCGATATG
CTGTCGCGTA ATGAAGCTGA GGAGGAGTTA GATCAGGTGC AGTTAATGAC CCTGCATGCA
TCCAAAGGCC TGGAGTTTCC CTATGTGTAT ATGATTGGCA TGGAGGAGGG GATTTTGCCG
CATCAAATCA GTATTGAGGA AGACAATGTT GAAGAAGAAA GACGCCTGAC TTATGTAGGA
ATAACCCGGG CAAAAAAAGA GTTAACTTTC ACTCTAGCCA AAGAGCGGAC TCAATATGGA
GAAACCATTA AACCCACACC AAGCCGTTTT TTATTTGAAT TACCGCAGGA TGATTTAGAT
TGGGAAAGTG GGCCATCGAA AAAAACAGAT CAGCAGAAAA AGCAGCTGGC GGACAAAGGG
ATTGCCAGTT TGCGTGCTCT ATTCGATTAA
|
|---|
| Protein sequence | MKLNPGQDAA VKMISGPCLV LAGAGSGKTR VITNKIAHLI QNCDYLAKNI AAVTFTNKAA
REMKERVSQT LGRKEARGLI VSTFHSLGLD IIKREVKTLG MKTGFTLFDG QDTLALLKEL
TEKQLKEDKD LLKALMSQIS NWKNALVLPP QAIKQAKGER EVIFAHCYDL YQRQLKAYNA
LDFDDLIVLP TLLLTHKEEV RLRWQKRIRY LLVDEYQDTN TSQYELIKAL VGERARFTVV
GDDDQSIYSW RGARPENLLL LQKDFPQLKV VKLEQNYRSS QRVLKSANVL IANNPHEFEK
RLFSELGYGD ALKVLFANNE QHEAERVVME LSGHKFMNGC SFKDYAVLYR GNHQSRLLEK
VMMANRIPYR ISGGTSFFAR SEVKDIMAYL KLLVNHEDDN AFLRIVNTPR RGIGPTSLEK
LGSYANMRHS RLFTCSFEMG LEQTLTGKGL QSLRAFTRWL VDLNDRLKRD PAIDVVRDLI
RDIGYEDWLY ESSPSPKAAE MGMKNVSTLF KWVTEMLKGD DLDEEMTLEQ VVARLTLRDM
LSRNEAEEEL DQVQLMTLHA SKGLEFPYVY MIGMEEGILP HQISIEEDNV EEERRLTYVG
ITRAKKELTF TLAKERTQYG ETIKPTPSRF LFELPQDDLD WESGPSKKTD QQKKQLADKG
IASLRALFD
|
|---|
| |