| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3445 |
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| Symbol | |
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| ID | 4625599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | - |
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| Start bp | 4255946 |
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| End bp | 4260166 |
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| Gene Length | 4221 bp |
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| Protein Length | 1406 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 639798562 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_944728 |
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| Protein GI | 119947048 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.638126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00045796 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TTTAAAGCAG CAAAATAAAA CCAAAGAATT TGATGGTATT
AAAATTGGTT TAGCATCACC TGAAATGGTC CGCTCATGGT CATTTGGTGA AGTTAAAAAA
CCAGAAACAA TTAACTACCG TACCTTTAAA CCTGAACGTG AAGGTTTATT CTGTGCGCGT
ATCTTTGGTC CAATCAAAGA TTACGAATGT TTATGTGGCA AGTATAAACG CCTGAAACAT
CGTGGTGTTA TTTGTGAAAA ATGTGGTGTT GAGGTAACTC AGTCTAAAGT TCGTCGTGAC
CGTATGGGCC ATATCGAATT AGCATCCCCT GTCGCTCACA TTTGGTTCCT TAAATCATTA
CCGTCTCGTA TCGGCTTAAT GCTTGATATG ACCCTGCGTG ATATTGAACG TATCCTCTAT
TTTGAATCTT TCGTGGTGGT TGAACCCGGC ATGACAGATC TTGAGCGTCG TCAAATTCTT
CTTGAAGAAG AATATTTAGA CATGCTTGAG CAGTGGGGCG ATGAGTTTGA AGCTGTAATG
GGCGCAGAAG CTATCTTCTC GCTATTAAAA CAGCTGGATC TCGATCATGA GATTGCTGAA
ATGCGTGAAG AGTTGGGGAC TACTAACTCT GAGACTAAGC GTAAAAAATT AACTAAACGT
CTGAAACTGG TTGAGTCTTT CCACCAGTCT TCAAACAAAC CCGAGTGGAT GATCCTGACT
GTATTGCCAG TGCTTCCGCC GGATTTACGT CCGCTTGTGC CACTTGATGG CGGTCGTTTT
GCGACATCGG ATCTAAATGA CTTATACCGT CGTGTTATTA ACCGTAATAA CCGTCTAAAA
CGCCTACTAG ATTTAGCGGC GCCAGATATC ATCGTACGCA ACGAAAAGCG TATGTTACAA
GAGTCTGTGG ATGCATTATT AGACAATGGT CGTCGTGGTC GTGCTATTAC AGGTTCTAAC
AAGCGTCCTC TGAAATCACT TGCTGATATG ATCAAAGGTA AACAGGGTCG TTTCCGTCAG
AATCTACTCG GTAAGCGTGT AGATTACTCC GGCCGTTCTG TAATTACAGT AGGACCGACA
CTGCGTTTAC ACCAGTGTGG TCTTCCTAAG AAAATGGCAC TTGAACTGTT CAAGCCCTTT
GTTTACGGAA AACTGGAAGC ATTAGGTCTT GCGACGACTA TTAAAGCGGC TAAAAAGCTT
GTTGATCGTG AAGGTGGTGA AGTTTGGGAC ATTCTGGAAG GCGTGATTCG CGAACATCCA
GTACTGCTTA ACCGTGCACC CACACTGCAC AGATTGGGTA TCCAGGCATT TGAACCCGTA
CTGATTGAAG GTAAAGCGAT TCAGCTTCAC CCGCTGGTTT GTGCGGCATA CAACGCCGAT
TTCGATGGTG ACCAAATGGC GGTACACGTA CCGTTAACTA TTGAAGCACA GCTTGAAGCT
CGTACTCTGA TGATGTCGAC CAATAACATC CTATCGCCAG CAAATGGTGA GCCGATTATT
GTTCCTTCTC AAGATGTTGT ACTTGGCCTT TATTACATGA CTCGTTCTAA GATAAATTCA
TTAGGCGAAG ACATGTGGTT CCAAAGCGCG AAAGAAGCAG AAAAAGCGTA TCGTGCCGGT
GCTGTTGGTT TACAAGCTAT TGTTAAAGTA CGTATGAAAC AAGTTCATAT TGCTGATGAC
AAGAGCCGTA CAGAAACAAC TAATATTATC GAAACAACCG TTGGCCGTGC GATTTTATCG
TTAATTATGC CAGAAGGTCT GCCCTTTGAG CTTGTTGATT TACCCATGGG TAAAAAGCAA
ATATCGACTG CACTGAATGC CTGTTACCGT CTATTGGGTA TTAAGCATAC GGTTATTTTT
GCTGACCAAT TAATGTATAC CGGTTTTGAA TATGCAACCT TGTCAGGTGC TTCGGTATGT
ATCGACGATA TGGTTATTCC TACTACTAAG AAAACCTTAG TTGAAGCTGC TGAAGCTGAA
GTTCAGGAAA TTCACGAACA GTTCCAGGCA GGTCTTGTAA CTGCCGGTGA GCGCTACAAC
AAAGTTATCG ATATCTGGGC AAGTGCGAAT GAGCAGGTTG CCAAAGCGAT GATGGAAAAC
CTTTCTAAAG ATACTGTTGT TAATAGCAAA GGTGAAGAAG TTCAACAAGA TTCGTTTAAC
AGCGTTTACA TGATGGCCGA CTCAGGTGCA CGTGGTAGTG CTGCACAGAT TCGTCAGTTA
GCGGGTATGC GTGGTTTGAT GGCTAAACCC GATGGTTCAA TCATCGAAAC GCCGATCACA
GCGAACTTCC GTGAAGGTCT AAACGTACTT CAGTACTTTA TCTCCACGCA CGGTGCACGT
AAAGGTCTGG CCGATACCGC ACTTAAAACA GCAAACTCGG GTTATCTAAC GCGTCGTCTT
GTTGATATCG CGCAAGATCT AGTTATCACT GAAAAAGATT GTGGTAGTGA AGATGGTCTG
CTAGTTACAC CGCTTATCCA GGGTGGTGAT GTTGTTGAAG CACTTCGTGA GCGTGTGCTT
GGTCGTGTTG TGGCTCAAGA CATCATTAAA CCGGGAACCA AGGGCGAAGT CCTAATTGCC
CGTAATGTTC TGCTTGATGA AAAACTATGT GACCTTATCG AAGAAGCATC TGTTGACCAA
GTTTGGGTAC GTTCAGTTAT CACTTGTCAA ACAGACTTTG GTGCTTGTGC ACAATGTTAC
GGCCGTGACC TTGCTCGTGG CCATATGGTC GGTCAAGGTG AAGCAATCGG TGTTATGGCA
GCGCAATCAA TCGGTGAGCC AGGAACACAG CTTACAATGC GTACCTTCCA CATCGGTGGT
GCTGCATCTC GTGCCGCTTC TGAAAACAAT ATTCAGGTTA AGAATACGGG TAAAATCAAA
CTGCATAACG CTAAGTTTGT AATTAACTCT GAGCAGAAAG TAGTTGTTAC TTCCCGTTCA
ACAGAATTAA CTATTATTGA TAAATTAGGC CGTACTAAAG AAAACCATAG ACTGCCTTAC
GGTGCCGTTC TTGAGAAACA AGATGGTGCT GAAATCACCT CTGGTGAAAT CATCGCTAAC
TGGGACCCGC ATACACATCC AATTATTACG GAAGTGGAAG GTACTGTTCA GTTCTTGGAC
TTTATCGAAG GTCTGAGCAT TACTAAACAA GCTGATGAAT TTACCGGTTT ATCAAGTACT
GTTATTATTG ATCCGGCACA GCGACCTAAT GCTGGTAAAG AATTGCGTCC GATGGTTAAA
CTTGTCGATC CACAGGGTAA TGACTTGTTT ATTCCCGGGA CAGATGTTGC GGCTCAATAT
GCACTTGCTG CAAACGCCAT CGTTAGTCTT GAAGATGGTG CAAAAGTACG AGTGGGTGAT
GCGGTTGCAC GTATTCCTCA AGAAAGCTCA AAAACACGTG ACATCACGGG TGGTTTACCA
CGCGTTGCCG ATCTGTTTGA AGCGCGTACG CCAAAAGATG CAGCCATTCT TGCAGAAGTT
TCTGGTACGC TTGCATTTGG TAAAGAGACT AAAGGCAAAC GCCGCTTAGT TATTACCCAG
GCAAACGGTG AAGCTTATGA AGAAATGGTG CCTAAATGGC GTCACCTGAA CATCTTCGAA
GGTGAGAAGA TTGAAAAAGG TGAGGTTATT TCTGATGGTC CTGAATCACC ACATGATATT
CTTCGTTTAC GTGGTATTAG CCCGGTTGCT AACTACATCA CTAATGAAGT ACAGGAAGTT
TACCGCTTAC AGGGCGTAAA AATTAATGAT AAACACATTG AAGTTATCGT TAACCAAATG
CTACGTAAAG GTACAATTAC TGATAATGGT GATTCTGCAT TCTTAGTAGG CGAACAGGCT
GAAGTTGCAC GTGTTGTGAT TGAAAACCGC CGCCTGGTAG CCGAAGGTAA AGCAATTGCT
ACTTTTGATT ATCAATTATT AGGTATCACG AAAGCATCTC TGGCAACTGA GTCGTTTATC
TCAGCCGCAT CTTTCCAAGA AACAACACGG GTTCTTACGG AAGCTGCTGT TGCCGGCAAG
TGTGATCAAT TACACGGCCT GAAAGAGAAT GTTATCGTTG GTCGTCTGAT TCCTGCCGGT
ACTGGTTTCG CTCATCATAG AGCAAGGGCC GCTGCGAAAG CTGCTGAACT GGCACCAAAA
GTTGAAGAAA CAATTGTAGA TACGGGTACA GCTGAACAAA ACTTAGCTGA CTTGCTAAAT
GCTGTTGATT TTGGTGATTA A
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| Protein sequence | MKDLLKFLKQ QNKTKEFDGI KIGLASPEMV RSWSFGEVKK PETINYRTFK PEREGLFCAR
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTQSKVRRD RMGHIELASP VAHIWFLKSL
PSRIGLMLDM TLRDIERILY FESFVVVEPG MTDLERRQIL LEEEYLDMLE QWGDEFEAVM
GAEAIFSLLK QLDLDHEIAE MREELGTTNS ETKRKKLTKR LKLVESFHQS SNKPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF VYGKLEALGL ATTIKAAKKL VDREGGEVWD ILEGVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTIEAQLEA
RTLMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRSKINS LGEDMWFQSA KEAEKAYRAG
AVGLQAIVKV RMKQVHIADD KSRTETTNII ETTVGRAILS LIMPEGLPFE LVDLPMGKKQ
ISTALNACYR LLGIKHTVIF ADQLMYTGFE YATLSGASVC IDDMVIPTTK KTLVEAAEAE
VQEIHEQFQA GLVTAGERYN KVIDIWASAN EQVAKAMMEN LSKDTVVNSK GEEVQQDSFN
SVYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDIAQDLVIT EKDCGSEDGL LVTPLIQGGD VVEALRERVL
GRVVAQDIIK PGTKGEVLIA RNVLLDEKLC DLIEEASVDQ VWVRSVITCQ TDFGACAQCY
GRDLARGHMV GQGEAIGVMA AQSIGEPGTQ LTMRTFHIGG AASRAASENN IQVKNTGKIK
LHNAKFVINS EQKVVVTSRS TELTIIDKLG RTKENHRLPY GAVLEKQDGA EITSGEIIAN
WDPHTHPIIT EVEGTVQFLD FIEGLSITKQ ADEFTGLSST VIIDPAQRPN AGKELRPMVK
LVDPQGNDLF IPGTDVAAQY ALAANAIVSL EDGAKVRVGD AVARIPQESS KTRDITGGLP
RVADLFEART PKDAAILAEV SGTLAFGKET KGKRRLVITQ ANGEAYEEMV PKWRHLNIFE
GEKIEKGEVI SDGPESPHDI LRLRGISPVA NYITNEVQEV YRLQGVKIND KHIEVIVNQM
LRKGTITDNG DSAFLVGEQA EVARVVIENR RLVAEGKAIA TFDYQLLGIT KASLATESFI
SAASFQETTR VLTEAAVAGK CDQLHGLKEN VIVGRLIPAG TGFAHHRARA AAKAAELAPK
VEETIVDTGT AEQNLADLLN AVDFGD
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