| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3428 |
|---|
| Symbol | |
|---|
| ID | 4625619 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 4237748 |
|---|
| End bp | 4239277 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 639798545 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_944711 |
|---|
| Protein GI | 119947031 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00904218 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAGC AGAATCCAAC ACAAGCAGCA AAGCAAGCAC CACAACAAGA GTTAAATGAC
ATTATGGCAC AACGCTTGGC CAAATTAGAT GCCATGCGTG AAAAGGGACA AGCATTTCCG
AATGACTTCC GCCGTGAAAA TATCTCTGAT GATTTACATG CACGTTATGA TGATAAAACC
AAAGAAGAGC TTGAAGAGCT CGCGGTTGAA GTCAGTATTG CCGGTCGTAT GATGATGCGC
CGTATTATGG GCAAAGCAAG TTTTGCGACT ATTCAGGATA TGGGCGGTCG TATTCAACTT
TATGTGACCC GTGATAAGCT CCCTGAAAGT TTCTACAACA CTGAATTTAA AAAATGGGAT
TTAGGCGATA TCATTGGTGC AAAAGGGGTT TTGTTTAAAA CCCAAACTAA TGAATTAAGC
ATTAAAGTCT CTGAAATCCG TATTCTAACT AAAGCACTGC GTCCGTTACC CGATAAATTC
CATGGACTTT CTGATACAGA AGCCTGTTAC CGTCAGCGCT ATCTGGACTT GATTGCCAAT
GACAACTCGC GCAAGACATT CCTGTTACGT AATAAAATCG TTAATGCTAT CCGTCAGTAT
TTAAATGATC GCGACTTTAT GGAAGTAGAA ACACCCATGC TGCAATCTAT TCCCGGCGGC
GCAGCGGCAA AACCCTTTGA AACTTACCAT AATGCACTTT CTTTACCCAT GTACCTGCGT
ATTGCCCCTG AATTAAACCT AAAACGTTTA GTAGTAGGTG GTTTTGAACG TGTATTTGAA
ATTAACCGCA GTTTCCGTAA CGAGGGCGTT TCAACCCGCC ATAACCCTGA ATTTACCATG
ATCGAATTTT ATCAGGCCTA TGCAGATTAT ATCGATCTGA TGAATCTGAC GGAAGAGATG
TTACGCAGTA TTGCAGAAAA TGTATTAGGT TCAAGCATTG TCAACTACGG CGATCAAGTG
TTTGACTTTG GCGCTGCTTT TATCCGCATG ACCATGAAAG AATCCGTGCT GCAATACAAT
GAAGGCATTG AAGCTTCTGA ACTTGAAAGC ATGGCAAGCC TTAAAGCCTT AGCCGCACGT
TTCAATGTGA ATATTAAAGA GAACTGGGGT GAAGGCAAAG TCTTAACCGA GATTTTTGAG
GAAACAACGG AACATAAACT GCTTCAACCA ACCTTTATAA CAGCTTATCC GGCTGAGGTT
TCACCTCTTG CCCGCCGTAA TGATCAAGAT CCGAGTGTGA CCGATCGTTT TGAGTTTTTT
GTGGGCGGAC GTGAACTTGC TAATGGTTTC TCTGAACTTA ATGATTCTCA AGATCAAGCT
GAGCGTTTCA TGGATCAGGT TGCTCAGAAA GAATCCGGTG ATGATGAGGC GATGTTCTAC
GATGCGGATT ATATTACCGC ACTTGAGCAC GGTTTGCCGC CAACAGCGGG TGAAGGTATT
GGTATTGATC GTCTGGTGAT GTTATTTACG GACAGCCATA CAATCCGTGA CGTATTGTTG
TTCCCGCATA TGCGTCCACA AGCAAAATAA
|
|---|
| Protein sequence | MSEQNPTQAA KQAPQQELND IMAQRLAKLD AMREKGQAFP NDFRRENISD DLHARYDDKT
KEELEELAVE VSIAGRMMMR RIMGKASFAT IQDMGGRIQL YVTRDKLPES FYNTEFKKWD
LGDIIGAKGV LFKTQTNELS IKVSEIRILT KALRPLPDKF HGLSDTEACY RQRYLDLIAN
DNSRKTFLLR NKIVNAIRQY LNDRDFMEVE TPMLQSIPGG AAAKPFETYH NALSLPMYLR
IAPELNLKRL VVGGFERVFE INRSFRNEGV STRHNPEFTM IEFYQAYADY IDLMNLTEEM
LRSIAENVLG SSIVNYGDQV FDFGAAFIRM TMKESVLQYN EGIEASELES MASLKALAAR
FNVNIKENWG EGKVLTEIFE ETTEHKLLQP TFITAYPAEV SPLARRNDQD PSVTDRFEFF
VGGRELANGF SELNDSQDQA ERFMDQVAQK ESGDDEAMFY DADYITALEH GLPPTAGEGI
GIDRLVMLFT DSHTIRDVLL FPHMRPQAK
|
|---|
| |