| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3417 |
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| Symbol | |
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| ID | 4625608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 4222506 |
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| End bp | 4225010 |
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| Gene Length | 2505 bp |
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| Protein Length | 834 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 639798534 |
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| Product | ribonuclease R |
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| Protein accession | YP_944700 |
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| Protein GI | 119947020 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.148177 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.629084 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAAG ACCCCTTCCT AGATCGCGAA GCGCAAACTT ACGAGCATCC AGTGCCAAGT
CGTGAATTTA TTTTAGAATA TTTAGAAAAA CAAGCAAAAC CTATTAGCCG TGATGCCCTG
TTTAACGCTT TTTCTTTAAG CGGTGAAGAG GAAGCCGAGG GGTTGCGTCG TCGTTTAAAA
GCGATGGAAC GTGATGGGCA ATTAGTCTGG TGCCGTAATG CGACTTATGC ACTCCCGGAC
AAATTGAATC TAATTAAAGG TAAAGTGATT GGCCACAAAG ATGGTTTTGG TTTTTTGAAA
ACTGAAGAAG AAGGTGCCGA TCTTTTTTTA CCCGCACATC AAATGCGTTT ACTCTTTCAC
GGCGATAAAG TCCTTGTCCA ACCGGTTAAA GTTGATTCGC GAGGTCGCAC CGAAGCGCGT
TTTGTACGTT TATTAGAAGA ACGTAAAGAA CCTATTGTCG GCCGTTATTT TGTCGAAGAC
GGCATCGCTG TCGTGGTGCC CGATGATTCT CGCATCAATC AAGATATTCT CATCAATCAA
GATAACAATC TCGGTGCCCG CCACGGACAA ATAGTCGTAG TGGAAATTCT CCAGCGTCCA
AAACCTCGTT TGACTGCAAA AGGTAAAATC ACTGAAATAC TGGGTCAAGA TATGGAACCC
GGTATGGAAG TTGAGGTTGC ACTGCGTACT CATGATATCC CGCATCAATG GCCTGAAGGT
TTAGACAAAG AATTAGAAAA CTTTACTGAA ACTGTGCCTG AAGAAGCGAT ACAAGGGCGT
GTAGATTTAC GCCAATTACC ACTGGTCACA ATAGATGGCG AAGATGCGCG CGATTTTGAT
GATGCGGTTT TCTGTAAAGC TGAAGCCGGT GGCGGCTGGC GTCTGTGGGT AGCTATTGCA
GACGTAAGCT ATTACGTTCG ACCCGGTACT ATTTTAGATA AAGAAGCGAT TAATCGTGGT
AACTCGGTCT ATTTCCCCGA CCAGGTTGTG CCTATGTTGC CGGAAATATT ATCTAATGGA
TTGTGCTCGT TAAATCCGCA GGTCGATCGT TTATGTATGG TCAGTGAAAT GGTTATTTCT
AAAGCCGGAC TGCTCACGGA TTACAAATTC TATGAAGCAG TAATGAATTC TCATGCACGC
TTTACTTATA CTAAAGTAGC GGCCATTTTA GAGGGTGATC AGACACTGCG CGAGCAGTAC
AAACCTTTAG TGCCTCATAT CGAAGAGTTA GAGCACCTTT ATAAAGCCTT CAAGCGCGCA
CGCAAGATTC GAGGTGGAAT GGAGTTTGAA ACCTTAGAAA CGCGTTTTAT TTTTGATCAA
AACCGTAAAA TAGAATCTAT CGAGCCAATA ACACGTAACG ATGCGCATAA GATCATAGAA
GAATGCATGA TTCAGGCAAA CGTTGCTTCG GCACGTTTAA TTGGCAAGGC AGAAGCTGCT
GCGTTATACC GCGTTCATGA AACTCCCAGT CAGGAAAAAT TAGTTAACTT CCGTTCATTT
TTGTCAGAGC TTGGTTTAAG CCTTGCCGGT GGAGAGAAAC CGGCACCGCG TGATTATGCG
GCATTAGCTG AAGAATTTGC GGGTCGTGAA GACAGTGAGC TTTTACAAAC CATGTTATTA
CGCTCAATGA AACAAGCTGT CTATCAAGAT GAAAATCTCG GACACTTTGG CTTGGCGTTA
GAAGAGTACG CTCACTTCAC CTCTCCTATT CGTCGTTACC CGGATCTGAT TTTACACCGT
GCCATTAAAT ATTTAATCGA ACATCAGGCA AAGGGTCAGT TGAAATCAAA ATGGACCAAT
ACCGGCGGAT ATCATTATCT ACATGAAGAG ATGGGTGCCT TAGGCGAGCA TTGTTCAATG
ACTGAACGCC GCGCCGATGA TGCCACTCGT GATGTAGGTG ACGCTTTAAA ATGTGAATAT
ATGCAGGATC ATGTTGGTGA TGTAATGCAC GGCACTATTG CCGCTGTCAC CAACTTTGGT
TTCTTTGTAC GCTTAACGGG TATTCAAATC GATGGCTTGG TCCATGTGAC AAGCTTACTG
TCTGATTATT ATATCTTTGA TGCAGGCAAA CAAACCCTTA AAGGTGAGCG TACGGGACGT
ACCTTTAGGA TCGGTGATGC ATTAGATGTG AAAGTGTTGT CAGTTAATTT AGATGATAAA
AAAATCGATT TTGAATTAGC GGATCAAGCG GCAGCGGGAC AACGAAAACG AGCTCAAAAT
ACGGCCGCGC GTGAAAACGA TCGCCCGATA GATAAACGGG CACGGTCAAA AGCGGCGGGC
AAAGGTCGCG CAAATGATAA CGCTAAAAAA AGCGATCAGC CGGTTGAAAA AGAACCCGCT
AAGCAAGAGC AAAAAGCCAA CAAGCCCAAA AGAAAAAGAA CGATAAAACA GGGCGAAAAA
AACACCGCAT CATCAAAAAC AAAAAAAACC ACGGCAACAG CTAAAAAAGT AGGTCGTGCT
GATCGCCGTA ATAAAATAAA ACAAGCAAAC AAAATAAATA GCTAA
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| Protein sequence | MTQDPFLDRE AQTYEHPVPS REFILEYLEK QAKPISRDAL FNAFSLSGEE EAEGLRRRLK
AMERDGQLVW CRNATYALPD KLNLIKGKVI GHKDGFGFLK TEEEGADLFL PAHQMRLLFH
GDKVLVQPVK VDSRGRTEAR FVRLLEERKE PIVGRYFVED GIAVVVPDDS RINQDILINQ
DNNLGARHGQ IVVVEILQRP KPRLTAKGKI TEILGQDMEP GMEVEVALRT HDIPHQWPEG
LDKELENFTE TVPEEAIQGR VDLRQLPLVT IDGEDARDFD DAVFCKAEAG GGWRLWVAIA
DVSYYVRPGT ILDKEAINRG NSVYFPDQVV PMLPEILSNG LCSLNPQVDR LCMVSEMVIS
KAGLLTDYKF YEAVMNSHAR FTYTKVAAIL EGDQTLREQY KPLVPHIEEL EHLYKAFKRA
RKIRGGMEFE TLETRFIFDQ NRKIESIEPI TRNDAHKIIE ECMIQANVAS ARLIGKAEAA
ALYRVHETPS QEKLVNFRSF LSELGLSLAG GEKPAPRDYA ALAEEFAGRE DSELLQTMLL
RSMKQAVYQD ENLGHFGLAL EEYAHFTSPI RRYPDLILHR AIKYLIEHQA KGQLKSKWTN
TGGYHYLHEE MGALGEHCSM TERRADDATR DVGDALKCEY MQDHVGDVMH GTIAAVTNFG
FFVRLTGIQI DGLVHVTSLL SDYYIFDAGK QTLKGERTGR TFRIGDALDV KVLSVNLDDK
KIDFELADQA AAGQRKRAQN TAARENDRPI DKRARSKAAG KGRANDNAKK SDQPVEKEPA
KQEQKANKPK RKRTIKQGEK NTASSKTKKT TATAKKVGRA DRRNKIKQAN KINS
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