Gene Ping_3398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_3398 
Symbol 
ID4625622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp4200515 
End bp4201315 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content42% 
IMG OID639798514 
ProductCof-like hydrolase 
Protein accessionYP_944683 
Protein GI119947003 
COG category[R] General function prediction only 
COG ID[COG0561] Predicted hydrolases of the HAD superfamily 
TIGRFAM ID[TIGR00099] Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATAAGA TTGCAGCATC AGATCTCGAT GGCACGCTGT TGACATCGGA ACACCAAATC 
CTTCCCTTTA CTAAGCAGGT ATTGACGCAA TTGCATCGCC AGGGCACTGA CTTTATTTTT
GCAACGGGTC GTCATCATAT TGATGTTGCA CATATGCGCA AACAGCTGGG CATTCCGGCA
TTTATGATCA CCTCCAATGG TGCGCGTGTG CATAACTGTG AGAATGAAAT AATTTTCAAG
CGCAATATAG CCCCGGATGT CATCAAAGGC ATGATTGAAA TGTTCCAAAG TGATCCGGAA
ATTCAAGTTC ACCTCTACCG TAATGATGAC TGGCTAATCA GCAAAGAGGA CCCAAACAAC
CCCTGTAAGC AGGAAAATTT TTCATACGGG CTATTTGATA TAAACAATCC ACCGTTGGAA
AATATCGCTA AAATTTTTAT AAAACACCAG GATCAAAACC ACGAAAAACT GGTTATCTGG
GAAAATAAAA TCAAAGCGGC ATTTCCAGGC CAGACCCATG TCACTTTTTC TTCACCCAAT
TGTCTTGAAA TGATGGATGG CGGAGTGTCA AAAGGACATG CTCTTGACGC TATTGCTAAA
ATGAAAGGTT ATGCACTAAA AGACTGTATC GCTTTTGGTG ATGGCATGAA TGATTTTGAA
ATGCTTTCTA TGGCGGGAAA AGGTCTGGTA ATGGGCAGTG CGCACCATAA AGTAAAATCA
GCGTTACCTA ATCATGAAAT CATAGGTCAC TGCGATGAAG AGGCTGTTGC GCATTATCTT
GTCAAACATC TGCTCGAATA A
 
Protein sequence
MYKIAASDLD GTLLTSEHQI LPFTKQVLTQ LHRQGTDFIF ATGRHHIDVA HMRKQLGIPA 
FMITSNGARV HNCENEIIFK RNIAPDVIKG MIEMFQSDPE IQVHLYRNDD WLISKEDPNN
PCKQENFSYG LFDINNPPLE NIAKIFIKHQ DQNHEKLVIW ENKIKAAFPG QTHVTFSSPN
CLEMMDGGVS KGHALDAIAK MKGYALKDCI AFGDGMNDFE MLSMAGKGLV MGSAHHKVKS
ALPNHEIIGH CDEEAVAHYL VKHLLE