Gene Ping_3354 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_3354 
Symbol 
ID4625699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp4144889 
End bp4146778 
Gene Length1890 bp 
Protein Length629 aa 
Translation table11 
GC content45% 
IMG OID639798467 
ProductDNA topoisomerase IV subunit B 
Protein accessionYP_944640 
Protein GI119946960 
COG category[L] Replication, recombination and repair 
COG ID[COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 
TIGRFAM ID[TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.778526 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0858286 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGACC AATACAATTC AGACTCGATC GAGGTATTAA ACGGTCTTGA TCCCGTTCGC 
CACCGTCCGG GAATGTACAC CGACACATCA CGTCCGAATC ATCTTGGTCA GGAAGTTATC
GACAATAGTG TGGATGAAGC GCTAGCGGGG CATGCGGCGA CTATCCAAGT GATTTTACAC
GAGGATCAAT CATTAGAAGT TATTGATGAT GGACGTGGTA TGCCGGTTGA TATTCACCCT
GAAGAGCGTA TTTCAGGTGT TGAGCTTATT TTCTGTAAAT TACATGCAGG GGGTAAATTT
TCAGGTAAAA ATTACGAAAT ATCTGGTGGT CTTCACGGTG TTGGGATCTC CGTCGTTAAT
GCATTATCAA AACGTGTTGA TGTGAGTATT CGTCGTGATG GTCAAGTGTA TGAAATTGCC
TTTGAAAATG GTGAAAAGGT TGAGGAGTTA CACGTAACGG GAGTCTGTGG AAAACGCAAT
ACAGGTACGA CAGTACATTT TCATCCCGAT CCCGCTTACT TTGACAGCGC CCGCTTTTCA
GTGTCCCGTT TACTGCATCT GTTAAAAGCC AAAGCCGTCT TATGTGCGGG TCTTACCATC
AAATTTAAAG ACAAAGTAAA TAAAAATGAC TATCAGTGGT GCTATCAAGA TGGTTTAAAT
GATTACCTGC TGGAAGCTGT TGCAGACAAC GAGTTATTAC CACCGCAGCC CTTTACTGGC
AAGTTTTCAG CAAAAAGTGA AACAGCAGAG TGGTCGGTAG TGTGGTTACC CGATGGCGGG
CCTTCACTAT CAGAAAGTTA CGTAAATTTA ATACCGACAG TGCAGGGCGG CACACACGTT
AATGGTTTTA GGCAGGGACT GCTGGATGCA ATGCGTGAGT TCTGTGATAT TCGTAACCTT
CTACCGCGCG GTCTAAAATT AAGCCCGGAA GATATTTGGG ATAGATGTGC CTATATCCTT
TCGGTTAAAA TCAAAGAGCC GCAGTTTGCC GGACAAACTA AAGAACGACT CTCATCAAGG
CAGTGCGTCG CTTTTGTTTC CGGTATAGTA AAAGATGCCT TTAGTTTATG GCTCAATGCG
CATGTTAATG AGGCTGAGTT ACTGGCTGAC TTCTGCATTA ATAATGCCCA GACCCGGACG
CGTAAAACTA AAAAAATTGC CCGTAAAAAA ATAACTCAAG GCCCCGCTCT TCCAGGTAAA
TTAACTGATT GTTCGACTCA GGAAACCATG CGTGGGGAGA TTTTTTTAGT TGAAGGTGAT
TCGGCTGGTG GCTCTGCAAA ACAGGCGCGG GATCGCGAGT TTCAGGCTAT TATGCCGTTA
CGGGGAAAAA TCAAAAATAC CTGGGAAGAC GACTCTGATA TTATTTTAAA TTCCGAAGAA
ATACATAATA TATCCGTGGC GATAGGAATC GATCCTGCTT CCTCGGACTT ATCCGGTTTA
CGTTATGGAA AAATCTGTAT CCTTGCCGAT GCCGATTCCG ATGGTCTGCA TATCGCGACG
CTTATCTGCG CCTTGTTCGT TCGTCATTTT AGAGCCGTGG TTGATGCCGG ACACCTGTTT
GTCGCGATGC CGCCATTATA CCGAATCGAC ATAGGTAAAG AGGTTTATTA TGCCTTGGAT
GAAGCAGAAA AAGACGGGGT GTTAGACCGT ATCGAAGCGG AGAAAAAACG CGGTAAAGTC
AATGTTCAGC GCTTTAAAGG TTTGGGTGAA ATGAACCCGT TGCAGTTACG TGAAACGACT
ATGGATCCTA ATACTCGCCG TTTAGTTCAG CTGACGACCG AAGGCGCTGA GGAAATGTTA
GAAATGATGG ATATGTTACT GGCGAAAAAA CGCGCAGGAG ATCGTAAAGT CTGGCTTGAA
GATAAAGGTG ATATGGCATC GGTTGATTAA
 
Protein sequence
MSDQYNSDSI EVLNGLDPVR HRPGMYTDTS RPNHLGQEVI DNSVDEALAG HAATIQVILH 
EDQSLEVIDD GRGMPVDIHP EERISGVELI FCKLHAGGKF SGKNYEISGG LHGVGISVVN
ALSKRVDVSI RRDGQVYEIA FENGEKVEEL HVTGVCGKRN TGTTVHFHPD PAYFDSARFS
VSRLLHLLKA KAVLCAGLTI KFKDKVNKND YQWCYQDGLN DYLLEAVADN ELLPPQPFTG
KFSAKSETAE WSVVWLPDGG PSLSESYVNL IPTVQGGTHV NGFRQGLLDA MREFCDIRNL
LPRGLKLSPE DIWDRCAYIL SVKIKEPQFA GQTKERLSSR QCVAFVSGIV KDAFSLWLNA
HVNEAELLAD FCINNAQTRT RKTKKIARKK ITQGPALPGK LTDCSTQETM RGEIFLVEGD
SAGGSAKQAR DREFQAIMPL RGKIKNTWED DSDIILNSEE IHNISVAIGI DPASSDLSGL
RYGKICILAD ADSDGLHIAT LICALFVRHF RAVVDAGHLF VAMPPLYRID IGKEVYYALD
EAEKDGVLDR IEAEKKRGKV NVQRFKGLGE MNPLQLRETT MDPNTRRLVQ LTTEGAEEML
EMMDMLLAKK RAGDRKVWLE DKGDMASVD