Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_3353 |
Symbol | |
ID | 4625698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | + |
Start bp | 4142979 |
End bp | 4144715 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 639798466 |
Product | 2-isopropylmalate synthase |
Protein accession | YP_944639 |
Protein GI | 119946959 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.378646 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.239583 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCGAATA TCAACTCTAG CTTTAACCAT AAAAAATATC GCGCCTATCC ATCCATTCCA AAAACCGATA GACGCTGGCC AGATCAAAGT ATCAAAGCAG CACCTCTGTG GTGTAGTGTA GATTTACGCG ATGGTAATCA AGCTCTGATT GAACCTATGA GCCCAAGCCA AAAGCTTGAT ATGTTTAAAC TGTTAGTTGA TGTCGGCTTT AAAGAGATTG AAGTTGGTTT TCCCGCAGCA TCGGCACCTG ATTTTGATTT TGTGCGTCAA TTAATTGAAC AGGATTTAAT TCCAGACGAC GTCACTATTC AAGTATTAAC CCAGGCACGC GAGCCTTTAA TAGCACGCAG CTTTGCCGCT TTAAAAGGCG CAAAAAAAGC CATAGTGCAC TTATATAACT CAACCTCAAC GGTGCAGCGA GAACAGGTAT TTAAAAAATC GCGCGATGAA ATTAAAACCC TTGCCATACA AGGTGCGCGA TGGATGCAGG AATTTGCCGC CGCTCAATCC GAGACAAAGT GGTCGTTTCA ATACTCGCCC GAGAGTTTTA CCGGCACCGA AAGGGAGTAT GCCTTAGAGG TGTGTAATGC TGTCATTAAC GTTTGGCAGC CGACACCTGA CAACAAGGTA ATTATTAATT TACCCTCGAC GGTTGAGACA TCAACGCCTA ACGTCTACGC AGATCAAATT GAATGGATCT GCGACAATAT CAGCCACCGC CAATCGGTCA GCATCAGCTT ACATACTCAC AATGACCGCG GCTGTGGCGT CGCTGCCTCT GAGCTCGGTG TACTGGCCGG TGCTGATCGT ATCGAAGGGA CATTACTTGG CAACGGTGAA CGCACGGGTA ATATGGATAT AGTGACGATG GCGATGAATA TATATAGTCA GGGCATTGAT CCAAAACTCG ATTTTTCCGA TATGGATCGT ATTATTGCAA CCATTGAGCG CTGCACACAA TTAGCCGTAC ACCCTCGTCA TCCCTACGCC GGTGAATTAG TTTTTGCAGC ATTTTCTGGC AGCCATCAGG ATGCGATTAA CAAATGTATG GCGATTGATG CGGCGCAGCG AATAGAGAAA CCAGAAACAC AATGGCAAGT GGCTTATCTG CCGATTGATC CGCGCGATTT AGGGCGAACT TATCAGCAGG TTATTCGCAT TAATAGCCAG TCAGGAAAAG GCGGAGTCGC CTATATACTG GAGCAGGACT ACGGTATACA AATGCCGCGC TGGATGCAGG TTGACTTTAG TCCCCATGTA CAACAGCATG CCGAACGCTC AGAAAGTGAA GTTTCAGCGA CTATTATTCA CGATATTTTT TCCAGTACTT ATTTAGCAGC ACAGAAAACC GCCAGTATCG ACAACTACCA GCTTAACCGT CAAAGTAACG CAGATAGTTT AGAGGCGCAG ATACTCGATA CTAATAACGG TGCAGTGACT ATTAATGGTC AGGGTAAAGG GGTTCTGGAC GCTTTTGTCA AAGGGTTAAG TGCGTCAATC GGAAGTGATA TTGTCTTAAT CGATTATAGC GAGCATGCCC TGCCGAGCAA AAAAGGGGCT GAAAATGAAC AGGCCGAAGC GATCGCCTAT GTGCAACTTA GCGTTCAAGG CGCGCGTTAC TGCGCGGCAG CCAAGTGCCA CGATATAGTC ACCGCTTCTT TGCAGGCAGT CCTTAATGCC GTTACCCGCA GTGGAGCTAC CTGCCAGCGC AGCAAGGCAG AATTAGCCGC AGTGTAG
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Protein sequence | MSNINSSFNH KKYRAYPSIP KTDRRWPDQS IKAAPLWCSV DLRDGNQALI EPMSPSQKLD MFKLLVDVGF KEIEVGFPAA SAPDFDFVRQ LIEQDLIPDD VTIQVLTQAR EPLIARSFAA LKGAKKAIVH LYNSTSTVQR EQVFKKSRDE IKTLAIQGAR WMQEFAAAQS ETKWSFQYSP ESFTGTEREY ALEVCNAVIN VWQPTPDNKV IINLPSTVET STPNVYADQI EWICDNISHR QSVSISLHTH NDRGCGVAAS ELGVLAGADR IEGTLLGNGE RTGNMDIVTM AMNIYSQGID PKLDFSDMDR IIATIERCTQ LAVHPRHPYA GELVFAAFSG SHQDAINKCM AIDAAQRIEK PETQWQVAYL PIDPRDLGRT YQQVIRINSQ SGKGGVAYIL EQDYGIQMPR WMQVDFSPHV QQHAERSESE VSATIIHDIF SSTYLAAQKT ASIDNYQLNR QSNADSLEAQ ILDTNNGAVT INGQGKGVLD AFVKGLSASI GSDIVLIDYS EHALPSKKGA ENEQAEAIAY VQLSVQGARY CAAAKCHDIV TASLQAVLNA VTRSGATCQR SKAELAAV
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