Gene Ping_3353 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_3353 
Symbol 
ID4625698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp4142979 
End bp4144715 
Gene Length1737 bp 
Protein Length578 aa 
Translation table11 
GC content47% 
IMG OID639798466 
Product2-isopropylmalate synthase 
Protein accessionYP_944639 
Protein GI119946959 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0119] Isopropylmalate/homocitrate/citramalate synthases 
TIGRFAM ID[TIGR00970] 2-isopropylmalate synthase, yeast type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.378646 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.239583 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCGAATA TCAACTCTAG CTTTAACCAT AAAAAATATC GCGCCTATCC ATCCATTCCA 
AAAACCGATA GACGCTGGCC AGATCAAAGT ATCAAAGCAG CACCTCTGTG GTGTAGTGTA
GATTTACGCG ATGGTAATCA AGCTCTGATT GAACCTATGA GCCCAAGCCA AAAGCTTGAT
ATGTTTAAAC TGTTAGTTGA TGTCGGCTTT AAAGAGATTG AAGTTGGTTT TCCCGCAGCA
TCGGCACCTG ATTTTGATTT TGTGCGTCAA TTAATTGAAC AGGATTTAAT TCCAGACGAC
GTCACTATTC AAGTATTAAC CCAGGCACGC GAGCCTTTAA TAGCACGCAG CTTTGCCGCT
TTAAAAGGCG CAAAAAAAGC CATAGTGCAC TTATATAACT CAACCTCAAC GGTGCAGCGA
GAACAGGTAT TTAAAAAATC GCGCGATGAA ATTAAAACCC TTGCCATACA AGGTGCGCGA
TGGATGCAGG AATTTGCCGC CGCTCAATCC GAGACAAAGT GGTCGTTTCA ATACTCGCCC
GAGAGTTTTA CCGGCACCGA AAGGGAGTAT GCCTTAGAGG TGTGTAATGC TGTCATTAAC
GTTTGGCAGC CGACACCTGA CAACAAGGTA ATTATTAATT TACCCTCGAC GGTTGAGACA
TCAACGCCTA ACGTCTACGC AGATCAAATT GAATGGATCT GCGACAATAT CAGCCACCGC
CAATCGGTCA GCATCAGCTT ACATACTCAC AATGACCGCG GCTGTGGCGT CGCTGCCTCT
GAGCTCGGTG TACTGGCCGG TGCTGATCGT ATCGAAGGGA CATTACTTGG CAACGGTGAA
CGCACGGGTA ATATGGATAT AGTGACGATG GCGATGAATA TATATAGTCA GGGCATTGAT
CCAAAACTCG ATTTTTCCGA TATGGATCGT ATTATTGCAA CCATTGAGCG CTGCACACAA
TTAGCCGTAC ACCCTCGTCA TCCCTACGCC GGTGAATTAG TTTTTGCAGC ATTTTCTGGC
AGCCATCAGG ATGCGATTAA CAAATGTATG GCGATTGATG CGGCGCAGCG AATAGAGAAA
CCAGAAACAC AATGGCAAGT GGCTTATCTG CCGATTGATC CGCGCGATTT AGGGCGAACT
TATCAGCAGG TTATTCGCAT TAATAGCCAG TCAGGAAAAG GCGGAGTCGC CTATATACTG
GAGCAGGACT ACGGTATACA AATGCCGCGC TGGATGCAGG TTGACTTTAG TCCCCATGTA
CAACAGCATG CCGAACGCTC AGAAAGTGAA GTTTCAGCGA CTATTATTCA CGATATTTTT
TCCAGTACTT ATTTAGCAGC ACAGAAAACC GCCAGTATCG ACAACTACCA GCTTAACCGT
CAAAGTAACG CAGATAGTTT AGAGGCGCAG ATACTCGATA CTAATAACGG TGCAGTGACT
ATTAATGGTC AGGGTAAAGG GGTTCTGGAC GCTTTTGTCA AAGGGTTAAG TGCGTCAATC
GGAAGTGATA TTGTCTTAAT CGATTATAGC GAGCATGCCC TGCCGAGCAA AAAAGGGGCT
GAAAATGAAC AGGCCGAAGC GATCGCCTAT GTGCAACTTA GCGTTCAAGG CGCGCGTTAC
TGCGCGGCAG CCAAGTGCCA CGATATAGTC ACCGCTTCTT TGCAGGCAGT CCTTAATGCC
GTTACCCGCA GTGGAGCTAC CTGCCAGCGC AGCAAGGCAG AATTAGCCGC AGTGTAG
 
Protein sequence
MSNINSSFNH KKYRAYPSIP KTDRRWPDQS IKAAPLWCSV DLRDGNQALI EPMSPSQKLD 
MFKLLVDVGF KEIEVGFPAA SAPDFDFVRQ LIEQDLIPDD VTIQVLTQAR EPLIARSFAA
LKGAKKAIVH LYNSTSTVQR EQVFKKSRDE IKTLAIQGAR WMQEFAAAQS ETKWSFQYSP
ESFTGTEREY ALEVCNAVIN VWQPTPDNKV IINLPSTVET STPNVYADQI EWICDNISHR
QSVSISLHTH NDRGCGVAAS ELGVLAGADR IEGTLLGNGE RTGNMDIVTM AMNIYSQGID
PKLDFSDMDR IIATIERCTQ LAVHPRHPYA GELVFAAFSG SHQDAINKCM AIDAAQRIEK
PETQWQVAYL PIDPRDLGRT YQQVIRINSQ SGKGGVAYIL EQDYGIQMPR WMQVDFSPHV
QQHAERSESE VSATIIHDIF SSTYLAAQKT ASIDNYQLNR QSNADSLEAQ ILDTNNGAVT
INGQGKGVLD AFVKGLSASI GSDIVLIDYS EHALPSKKGA ENEQAEAIAY VQLSVQGARY
CAAAKCHDIV TASLQAVLNA VTRSGATCQR SKAELAAV