Gene Ping_3294 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_3294 
SymbolpyrB 
ID4625780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp4066632 
End bp4067567 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content39% 
IMG OID639798404 
Productaspartate carbamoyltransferase catalytic subunit 
Protein accessionYP_944580 
Protein GI119946900 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0540] Aspartate carbamoyltransferase, catalytic chain 
TIGRFAM ID[TIGR00670] aspartate carbamoyltransferase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.773416 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.168026 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAATC CATTATATCA AAAAAATATT ATCTCCATCT CCGACCTTTC TCGTGCAGAG 
CTTGAACTTA TTCTAACAAC AGCTCAATCA TTAAAACACA ACCCGCAACC CGAGCTGTTA
AAAAATAAAG TTATTGCCAG TTGTTTCTTT GAAGCGTCAA CACGAACCCG CCTTTCATTT
GCAACAGCAG TGCAGAGGTT GGGAGGAACT GTGATTGGTT TTGATAATGC AGGAAATACC
TCATTAGCAC AAAAAGGGGA AACACTGGCA GATTCAGTTA AAATAATCGC TTCTTATGCT
GACGCTTTTT TTATACGCCA CCCGCAGGAA GGTGCGGCTC GTTTAGCGGC GGAATTTACC
AACATCCCTG TTATCAATGG TGGAGACGGA TCGAATCAAC ATCCTACGCA AACATTATTA
GATCTGTTTA CCATTTATGA AACGCAAAAC AGACTCGATA ACCTGAATAT TGCCTTTGTA
GGCGATCTAA AATATGGCCG AACAGTGCAC TCATTGGCAC AAGCTTTGTC TTTATTTAAC
TGTAATTTCT ATTTTATCGC TCCAGAAGCT TTGGCAATGC CCGACTACAT ACTGGAAGAA
CTTAATGAGA AAGGGATCAA TTATTCTGTG CATAGCAGTA TTGAAGAGGT TGTTGATTCA
CTCGATGTGT TGTATATGAC AAGGGTGCAA AAAGAACGTT TTGATGAAAC GGAATATCAA
CATATTAAAT CCGCATTTTT GTTAAATGCA GATATGTTAG AAAACGTGCG GGAAAACTTA
AAAGTACTGC ACCCGTTACC TCGTGTGGAT GAAATTAATA TCAATGTCGA TAAGACACCC
TATGCTTATT ATTTTCAACA AGCTCAAAAT GGCATTTATG CACGACAGGC TTTATTGGCT
TTATTGTTAA CAAACCATTT CCAAGATCAA GCGTAA
 
Protein sequence
MNNPLYQKNI ISISDLSRAE LELILTTAQS LKHNPQPELL KNKVIASCFF EASTRTRLSF 
ATAVQRLGGT VIGFDNAGNT SLAQKGETLA DSVKIIASYA DAFFIRHPQE GAARLAAEFT
NIPVINGGDG SNQHPTQTLL DLFTIYETQN RLDNLNIAFV GDLKYGRTVH SLAQALSLFN
CNFYFIAPEA LAMPDYILEE LNEKGINYSV HSSIEEVVDS LDVLYMTRVQ KERFDETEYQ
HIKSAFLLNA DMLENVRENL KVLHPLPRVD EININVDKTP YAYYFQQAQN GIYARQALLA
LLLTNHFQDQ A