| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3143 |
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| Symbol | |
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| ID | 4626154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | - |
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| Start bp | 3866752 |
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| End bp | 3868578 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 639798247 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_944430 |
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| Protein GI | 119946750 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.322053 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTGG ATGCCAATAA AAAACTGCTC TTTGAACATC AAAAGGCGGA AAAGCTCGCT
GCTGAATTAG TCAGAGCCAA TAAAAAATTG TTATTTGAGC ATGAAGAAAA AGAAAAACTG
GCTGCTGAGT TAATCATTGC CCGTGAATTT CGTATTGCTG CCATCATATT TGAATCTCAA
GAAGGTATGC TTGTCACAGA TGCTAATAAA CATATTCTTC GTGTGAATAA GGCCTTTACT
CGCATTTCAG GCTACAGTGC AGAAGAGGTT ATTGGACAAA CACCCAAGCT CTTTAGCTCA
GGCCGACAAG ACAAAGTGTT CTATAAGGCG ATGTGGGACA GTATCAATAC CACCAACACA
TGGGAAGGTG AAATTTGGAA TCGCTGCAAA AATGGTGACA TCTATCTAGG GCATATGACT
ATTACCGCAG TGAGAGACAC GGGCAATATG ATCTCTAATT ATGTTGCTAC GATCACCGAT
ATTACGCTAA ACAAAGCCGC CTTAGAAAAA ATCAATAACC TCGCCTACTT TGATCAAATC
ACTCAGTTGC CAAATCGTCT TTTTTTAGTT GATAAGCTTA ATCTCGCCCT AGCTGAAAGT
GCCCACAGTA ATCATCATGG TGCATTACTA TTTATTGATT TAAACCAGCT TAAAATCATC
CACAGCATCC ACGGGTACAG TGTGAGAAAT TTACTGTTAA AACAAGTATC CACTCGCTTA
ACTAAGATTG TAAGAAAAGC TGATACCATA GCCCGAGTAA GCGGTGATGA GTTCGTAATA
CTTTTAGAAA ACTTGAGTCA GCAAAACATT GAAGTTACCA CCGAAATCCA AAATATTGCT
AAAAAAATTA TTTTTTCATT AAATCAACCC TACCAGCTCA ATATGTACAA ATATCGCGGT
ACCGTCAGTA TTGGCGCAAC AATATTCAAT GGGAATGAAT TCGCATCGGA AAAACTGTTA
AAGCAAGCTG ATATTGCTAT GCATCAATCT AAGGTCGCAG GGCGCAATCG CCTTTGTTTC
TTTAATCAAA CAATGCAAGA GGCTATTACA GCCCGTGCTG AGATGGAACA GAAACTACGC
GAAGCGATTG AACACAATCA ATTTCAGCTA TATTATCAAA TACAGGTTAG CAGTTCTGGT
CAAGCATTAG GGGCTGAAGC CTTAATCCGT TGGCAGCATC CAGAAGATGG TCAGATTTCC
CCCTTTAACT TTATACCTTT AGCCGAAGAA ACCGGACTTA TTTTACCAAT AGGAGAATGG
GTATTAAACA CAGCCTGCGC TCAACTTAAA AAATGGCAAC AAAACCCACT AACACAAGAC
CTTGTACTTG CTGTTAATGT AAGTGCTCTA CAAATTCATC AAGAAGACTT TGTAGAGCAA
CTAAAAAGCA TCCTGCAAAA GCATAAAATC ACCCCTGAAC GGCTTAAATT AGAACTAACT
GAAAGTATGT TGGTAGAAAA TGTCAGCGGC ATTATTACTA AAATTAATAC ACTGAGAAAA
ATAGGTGTTT TATTTTCATT AGATGACTTT GGTACTGGTT ATTCTTCTTT ACAATATCTT
AAAAAATTGC CAATCAATCA ATTAAAAATA GACCAGTCAT TTGTGCGAGA CCTTATCACG
GATACCAATG ACAGAGCGAT TGTACGCACC ATCATTACCA TGTCACATAA TTTAGGTCTT
AACGTTATTG CCGAGGGTGT AGAGACGGTA GAACAAAAAC AATACTTATT GAGTGAAGGC
TGTATGAATT ATCAAGGCTA CCTATTTAGT AAGCCCGTAC CAATTGATGA GTTTGAAGCG
TTGATTTTTC GTTTAAGTGA TACCTGA
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| Protein sequence | MSLDANKKLL FEHQKAEKLA AELVRANKKL LFEHEEKEKL AAELIIAREF RIAAIIFESQ
EGMLVTDANK HILRVNKAFT RISGYSAEEV IGQTPKLFSS GRQDKVFYKA MWDSINTTNT
WEGEIWNRCK NGDIYLGHMT ITAVRDTGNM ISNYVATITD ITLNKAALEK INNLAYFDQI
TQLPNRLFLV DKLNLALAES AHSNHHGALL FIDLNQLKII HSIHGYSVRN LLLKQVSTRL
TKIVRKADTI ARVSGDEFVI LLENLSQQNI EVTTEIQNIA KKIIFSLNQP YQLNMYKYRG
TVSIGATIFN GNEFASEKLL KQADIAMHQS KVAGRNRLCF FNQTMQEAIT ARAEMEQKLR
EAIEHNQFQL YYQIQVSSSG QALGAEALIR WQHPEDGQIS PFNFIPLAEE TGLILPIGEW
VLNTACAQLK KWQQNPLTQD LVLAVNVSAL QIHQEDFVEQ LKSILQKHKI TPERLKLELT
ESMLVENVSG IITKINTLRK IGVLFSLDDF GTGYSSLQYL KKLPINQLKI DQSFVRDLIT
DTNDRAIVRT IITMSHNLGL NVIAEGVETV EQKQYLLSEG CMNYQGYLFS KPVPIDEFEA
LIFRLSDT
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