Gene Ping_3129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_3129 
Symbol 
ID4626140 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp3853361 
End bp3855694 
Gene Length2334 bp 
Protein Length777 aa 
Translation table11 
GC content43% 
IMG OID639798240 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_944423 
Protein GI119946743 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.765489 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGACAC CTGCAAAGTC AACCAAGCTA TCCAGCAAAA CGTTACGCCG GCGCGCGGAA 
GCACAACTGA AAACACAAAC AGAAATCAAA CAAACTATTC CTAGCGACTA TGCAGCCAAA
AAGATGATAC ACGAATTGCA GGTTCATCAG ATTGAACTAG AAATGCAGAA TGAGGAGTTA
AAGCAAGCAC GGATAGCTGA AAAATTACAT TATCGCTATA CCGAATTATT TGAATTTGCA
CCGATTGGCT ACTTTTCTTT TAATCTGAAG GGCGTCATCA ATCAGGTTAA TTTACGCGGG
GCGAGCCTAT TGGATATTGA ACGCGCTAAC TTGGTAGGAA AACAGTTTTC AAACTGCCTA
ACAGCCCAAG ATCGTAATAA ATTCAACCGT TGTCTGGCAA AAGCATTTGC GGGTGATGGC
ATACAATCCT TTGAGGTCTT AGCACAGGTT GGCAAGCATA AGTGTTGGCT GAATATTGAA
GCCAATCTCG GCATTACCGA AACAGACTGT CTTGCGGCGG TGATTGACAT TACCGACCGT
AAACGCGCCG ATGAAGAACT GCTTTTTCAA AATGATGAAA AAGGAAAGCG GACTGATGAG
TTAGTCATAG CTAATAAAGA ACTGTTCTTT CAAAATGCAG AAAAAGAAAA GCGGGTTGGT
GAACTTCGTG TTGCCGCCAC CGTATTTGAA ACTCAAGAAG GTATGTTTGT CACAGATGCT
AATCTGTGTA TTCTTCGTGT GAATAAAGCC TTTACCAATA TTTCAGGTTA CAGTGGAGAA
GAGGTTATTG GGCAGTCACC TAAGCTATTT AACTCAGGCC GCCAAGACAA AGCGTTCTAT
AAGGAGATGT GGAACAGTAT CAACACCACC GATGCATGGA GAGGTGAAGT CTCGAATCGC
AGCAAAAGCG GTGACATCTA TGCAAAGAAT CTCACTATTA CGGCAGTGAG AGACGGAAAA
GGGGTGGTCT CTAATTATGT TGCCACGTTT AGAGATATTA CAACAAGCAA AGCTGCTTCT
GAAAAAATCA ATAACCTCGC CTACTTTGAC CCGCTCACTC AGTTGCCAAA TCGTCGCATG
CTGCTTGATA GTCTTAGACA CGTCCTAACT ATCAGTGCCC GCAGCAATCA GCATTGTGCA
TTACTATTTC TTGATTTAGA CAACTTTAAA ACCCTTAACG ACACCCTTGG TCACGATGTG
GGAGATTTAC TCTTACAACA AGTAGCTACT CGCTTAACTG ACTGTGTAAG AGAAGGCGAT
ATCGTCGCCC GATTAGGCGG TGATGAGTTT GTGGTGTTAT TAGAAAACCT GAGCCTACAA
GCGATTGAAG CGGCCAACAA AGCGAAAAAG GTGGCCAAAA AAATCATATT TGAACTGGCT
CAATACTATC AGCTCAATAT GCACAGGTAT CACAGCACCA CCAGTATCGG CGTGACAATA
TTCAGTGGGA ATGAAACGGG AATAGAGGAG CTGTTAAAGC AAGCAGACAT TGCTATGTAT
CAATCCAAGG CCGCAGGACG CAACACCTGG CATTTCTTTA ATAAAACGAT GCAAGAATCT
ATCATTGCCC GTGCAGACAT GGAGCGGGAT CTACGCAAAG CGATTGAAGA CAATCAATTC
CAGCTACATT ATCAAGCCCA GGTAAGCAGT TCTGGCCAAA CATTAGGGGC TGAAGCCTTA
ATCCGTTGGC AACATCCAGA GCGTGGTCAG GTTTCACCCT TTAACTTCAT TCCTTTAGCC
GAAGAAACAG GACTTATTTT ACCGATAGGA CAATGGGTAT TAGACTCGGC CTGCGCTCAG
CTTAAAGCAT GGCAAAAAAA CCCACTGACA CAAGACCTTG TACTCGCCGT CAATATCAGT
GCTAAGCAAC TTCATCAAGA AGACTTTGTA GAACAGGTCA AAGCTACCCT AAAACGGCAT
GATATTAACC CTGCACGACT CAAGCTAGAA CTAACCGAAA GTATGTTGGT CGAAAATATC
AGCGACATCA TTACCAAAAT GAATATTCTG AGCAAAATAG GTATTTCATT CTCATTAGAT
GACTTTGGGA CGGGTTATTC TTCTTTACAA TATCTAAAAA AATTGCCTCT CAATCAAATA
AAGATAGACC AGTCATTTGT GCGCGACCTT ATTACGGATG CCAGTGACAG AGCGATTGTA
CGCACCATCA TTACCATGTC GCATAGCTTA GATATTAGCG TTATTGCCGA GGGTGTCGAG
ACAGTAGAGG AAAGACAATA CTTGTTGGAT AACGGCTGTA CGCATTATCA AGGCTATCTG
TTTAGTAAGC CCGTGCCGAT TAATGAGTTT GAAGTCTTGC TTAAGAAAGG CTGA
 
Protein sequence
MKTPAKSTKL SSKTLRRRAE AQLKTQTEIK QTIPSDYAAK KMIHELQVHQ IELEMQNEEL 
KQARIAEKLH YRYTELFEFA PIGYFSFNLK GVINQVNLRG ASLLDIERAN LVGKQFSNCL
TAQDRNKFNR CLAKAFAGDG IQSFEVLAQV GKHKCWLNIE ANLGITETDC LAAVIDITDR
KRADEELLFQ NDEKGKRTDE LVIANKELFF QNAEKEKRVG ELRVAATVFE TQEGMFVTDA
NLCILRVNKA FTNISGYSGE EVIGQSPKLF NSGRQDKAFY KEMWNSINTT DAWRGEVSNR
SKSGDIYAKN LTITAVRDGK GVVSNYVATF RDITTSKAAS EKINNLAYFD PLTQLPNRRM
LLDSLRHVLT ISARSNQHCA LLFLDLDNFK TLNDTLGHDV GDLLLQQVAT RLTDCVREGD
IVARLGGDEF VVLLENLSLQ AIEAANKAKK VAKKIIFELA QYYQLNMHRY HSTTSIGVTI
FSGNETGIEE LLKQADIAMY QSKAAGRNTW HFFNKTMQES IIARADMERD LRKAIEDNQF
QLHYQAQVSS SGQTLGAEAL IRWQHPERGQ VSPFNFIPLA EETGLILPIG QWVLDSACAQ
LKAWQKNPLT QDLVLAVNIS AKQLHQEDFV EQVKATLKRH DINPARLKLE LTESMLVENI
SDIITKMNIL SKIGISFSLD DFGTGYSSLQ YLKKLPLNQI KIDQSFVRDL ITDASDRAIV
RTIITMSHSL DISVIAEGVE TVEERQYLLD NGCTHYQGYL FSKPVPINEF EVLLKKG