Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_3129 |
Symbol | |
ID | 4626140 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | + |
Start bp | 3853361 |
End bp | 3855694 |
Gene Length | 2334 bp |
Protein Length | 777 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 639798240 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_944423 |
Protein GI | 119946743 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.765489 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACAC CTGCAAAGTC AACCAAGCTA TCCAGCAAAA CGTTACGCCG GCGCGCGGAA GCACAACTGA AAACACAAAC AGAAATCAAA CAAACTATTC CTAGCGACTA TGCAGCCAAA AAGATGATAC ACGAATTGCA GGTTCATCAG ATTGAACTAG AAATGCAGAA TGAGGAGTTA AAGCAAGCAC GGATAGCTGA AAAATTACAT TATCGCTATA CCGAATTATT TGAATTTGCA CCGATTGGCT ACTTTTCTTT TAATCTGAAG GGCGTCATCA ATCAGGTTAA TTTACGCGGG GCGAGCCTAT TGGATATTGA ACGCGCTAAC TTGGTAGGAA AACAGTTTTC AAACTGCCTA ACAGCCCAAG ATCGTAATAA ATTCAACCGT TGTCTGGCAA AAGCATTTGC GGGTGATGGC ATACAATCCT TTGAGGTCTT AGCACAGGTT GGCAAGCATA AGTGTTGGCT GAATATTGAA GCCAATCTCG GCATTACCGA AACAGACTGT CTTGCGGCGG TGATTGACAT TACCGACCGT AAACGCGCCG ATGAAGAACT GCTTTTTCAA AATGATGAAA AAGGAAAGCG GACTGATGAG TTAGTCATAG CTAATAAAGA ACTGTTCTTT CAAAATGCAG AAAAAGAAAA GCGGGTTGGT GAACTTCGTG TTGCCGCCAC CGTATTTGAA ACTCAAGAAG GTATGTTTGT CACAGATGCT AATCTGTGTA TTCTTCGTGT GAATAAAGCC TTTACCAATA TTTCAGGTTA CAGTGGAGAA GAGGTTATTG GGCAGTCACC TAAGCTATTT AACTCAGGCC GCCAAGACAA AGCGTTCTAT AAGGAGATGT GGAACAGTAT CAACACCACC GATGCATGGA GAGGTGAAGT CTCGAATCGC AGCAAAAGCG GTGACATCTA TGCAAAGAAT CTCACTATTA CGGCAGTGAG AGACGGAAAA GGGGTGGTCT CTAATTATGT TGCCACGTTT AGAGATATTA CAACAAGCAA AGCTGCTTCT GAAAAAATCA ATAACCTCGC CTACTTTGAC CCGCTCACTC AGTTGCCAAA TCGTCGCATG CTGCTTGATA GTCTTAGACA CGTCCTAACT ATCAGTGCCC GCAGCAATCA GCATTGTGCA TTACTATTTC TTGATTTAGA CAACTTTAAA ACCCTTAACG ACACCCTTGG TCACGATGTG GGAGATTTAC TCTTACAACA AGTAGCTACT CGCTTAACTG ACTGTGTAAG AGAAGGCGAT ATCGTCGCCC GATTAGGCGG TGATGAGTTT GTGGTGTTAT TAGAAAACCT GAGCCTACAA GCGATTGAAG CGGCCAACAA AGCGAAAAAG GTGGCCAAAA AAATCATATT TGAACTGGCT CAATACTATC AGCTCAATAT GCACAGGTAT CACAGCACCA CCAGTATCGG CGTGACAATA TTCAGTGGGA ATGAAACGGG AATAGAGGAG CTGTTAAAGC AAGCAGACAT TGCTATGTAT CAATCCAAGG CCGCAGGACG CAACACCTGG CATTTCTTTA ATAAAACGAT GCAAGAATCT ATCATTGCCC GTGCAGACAT GGAGCGGGAT CTACGCAAAG CGATTGAAGA CAATCAATTC CAGCTACATT ATCAAGCCCA GGTAAGCAGT TCTGGCCAAA CATTAGGGGC TGAAGCCTTA ATCCGTTGGC AACATCCAGA GCGTGGTCAG GTTTCACCCT TTAACTTCAT TCCTTTAGCC GAAGAAACAG GACTTATTTT ACCGATAGGA CAATGGGTAT TAGACTCGGC CTGCGCTCAG CTTAAAGCAT GGCAAAAAAA CCCACTGACA CAAGACCTTG TACTCGCCGT CAATATCAGT GCTAAGCAAC TTCATCAAGA AGACTTTGTA GAACAGGTCA AAGCTACCCT AAAACGGCAT GATATTAACC CTGCACGACT CAAGCTAGAA CTAACCGAAA GTATGTTGGT CGAAAATATC AGCGACATCA TTACCAAAAT GAATATTCTG AGCAAAATAG GTATTTCATT CTCATTAGAT GACTTTGGGA CGGGTTATTC TTCTTTACAA TATCTAAAAA AATTGCCTCT CAATCAAATA AAGATAGACC AGTCATTTGT GCGCGACCTT ATTACGGATG CCAGTGACAG AGCGATTGTA CGCACCATCA TTACCATGTC GCATAGCTTA GATATTAGCG TTATTGCCGA GGGTGTCGAG ACAGTAGAGG AAAGACAATA CTTGTTGGAT AACGGCTGTA CGCATTATCA AGGCTATCTG TTTAGTAAGC CCGTGCCGAT TAATGAGTTT GAAGTCTTGC TTAAGAAAGG CTGA
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Protein sequence | MKTPAKSTKL SSKTLRRRAE AQLKTQTEIK QTIPSDYAAK KMIHELQVHQ IELEMQNEEL KQARIAEKLH YRYTELFEFA PIGYFSFNLK GVINQVNLRG ASLLDIERAN LVGKQFSNCL TAQDRNKFNR CLAKAFAGDG IQSFEVLAQV GKHKCWLNIE ANLGITETDC LAAVIDITDR KRADEELLFQ NDEKGKRTDE LVIANKELFF QNAEKEKRVG ELRVAATVFE TQEGMFVTDA NLCILRVNKA FTNISGYSGE EVIGQSPKLF NSGRQDKAFY KEMWNSINTT DAWRGEVSNR SKSGDIYAKN LTITAVRDGK GVVSNYVATF RDITTSKAAS EKINNLAYFD PLTQLPNRRM LLDSLRHVLT ISARSNQHCA LLFLDLDNFK TLNDTLGHDV GDLLLQQVAT RLTDCVREGD IVARLGGDEF VVLLENLSLQ AIEAANKAKK VAKKIIFELA QYYQLNMHRY HSTTSIGVTI FSGNETGIEE LLKQADIAMY QSKAAGRNTW HFFNKTMQES IIARADMERD LRKAIEDNQF QLHYQAQVSS SGQTLGAEAL IRWQHPERGQ VSPFNFIPLA EETGLILPIG QWVLDSACAQ LKAWQKNPLT QDLVLAVNIS AKQLHQEDFV EQVKATLKRH DINPARLKLE LTESMLVENI SDIITKMNIL SKIGISFSLD DFGTGYSSLQ YLKKLPLNQI KIDQSFVRDL ITDASDRAIV RTIITMSHSL DISVIAEGVE TVEERQYLLD NGCTHYQGYL FSKPVPINEF EVLLKKG
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