Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_3112 |
Symbol | |
ID | 4625904 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | - |
Start bp | 3829437 |
End bp | 3831923 |
Gene Length | 2487 bp |
Protein Length | 828 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 639798225 |
Product | ATP-dependent RNA helicase, DEAD box family protein |
Protein accession | YP_944408 |
Protein GI | 119946728 |
COG category | [R] General function prediction only |
COG ID | [COG1204] Superfamily II helicase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.471561 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCTA ATATAACTTT AATAGATAAA TTAACCACAG ACTCAATTAA AAGCGTTCAT TTTAATGCTT TATATCAAAC ACTTTCGATT GCTTACGCAG ATAGCAAGCT TAAAATTCCG TCGTTTATAA CATCAAAAAA AACTGATGAT TTATGTAGAT ATGCGGATAT CTTTAGTCTG TCAGAAGAAT CTGAGTATAG AGTATTAGCT TATCGTATTA TTGTAAAATT ACTTGGAGTC TCGGAGAAAA AGCCTGCTTT GGGTAGTATG GCTAGGTCTA TTTTCACCAA GCTTGGCCTG TTTTTTTCCG AATCAAGATT TGATAAGGAT GAACATCCGT TGCCTTACGA GCGTGAAGTT AGCAACATTC TAAAAAGAGA TAGACAGAAG TTGCCTTTCG GGAATGAAGT GTTTACAGAC TCACAGTATG AAGTTTTTAC TAGTTTAACT GAGCTTGATA ACTTTAGTTT TTCAGGTCCA ACGTCATTTG GCAAGTCATT TATAATTAGA AGCTATATAT TTGACTGTAT CAGTAATAAA AAAAATGTAG TTATTTTAGT ACCTACCAAA GTACTCATTG AAGAATATAT AAGGGAAATC AGAAAGACAA TAAAAGTTGA AGGCTGGGGT AATGTAAATT TATCAAAGAA TGCACAATCC TATATTGAAG ATAAGATAAA TATCTTAATT TTAACTCCTG AACGATTCAA TAATTTAATT TATACCGACT TAGAACTATC AATTGATGTA TTGGTTGTTG ATGAAGCACA CAAACTTGGT GATGATGATG AGCGATCAAT GACATCCTTT AAAGTTATTC AAGAAACTAG AAAAAGATTG CCTACTTGTA AAGTAATCTT TAGTTCTCCT GTTATAAGTA ATCCTTCAGT ATTCTTAGAA TCGTTTGGGC TAGATGGTCG AAATTCAATT GAAGCAATAG AAGGTCCAGT AACACAGAAT TTGTTTTTTA TCGATTTATT GAATAATAGT AGTCAGTTTT ATAATGAAGT AAGTAAAGAA TTTTATACAC ATACAAAAGA GTTGAAAATT GAAGATATGT TTAGCTTCAT TCGGAGCGTT ACTTCTAAAT CCTCACTAAT CTACTGTACT TCTAAATCAG GCTCAGTAAG TGATGCTGTA TTATTTGCTG AGGACTTACC TTTATTAACG AATCCAAAAT TAGTTGCAGC ATCTAAAAAT ATTAAAGAAT TGATTCATGA AGAGTATTTC CTTTCTGATT TATTGTTAAA AGGCGTTGCA TTTCATAATG CTGACTTACC AAAAAATGTA CGAAGTATTA TCGAAAGTCT TTATCAATCT CGTGAAATAG CTTACTTGTT TTGCACATCA ACTTTATTAG AAGGTGTTAA TTTACCAACA GGTAATTTGT TTTTAAGATC GTTTAAAACT AGAGGCAAAA TTACTAACAA AACAAAGTTA GATTTTTGGA ATCTAGCGGG GCGTGCCGGA AGATATACCA AAGAGTTAGA TGGCAACATT TTTTGTATGC GAGACACTTC AAGTAGTTGG GGAAACATCT CAACTCTTGT TGAGAAAAAG AATGAAGTGA AAGCTGACAC ATCTGCATTA AAACGCTTAA TGCGTGGTCG AAAGATTATT AATGTACTAA AGGATGGTCC ATTAAATGAG GAGAAACAAG AAAGAATTAT GGATCAAATA TCTAACATGA TTCTTTCAGA CTATATGGAG AATAAACAAA AAAATCATCC TTCAAGTTTG ATGAACTTAG TACCAAAAAA GTTCCATAGT GGATTATTTA AAGTGTTAGA GGACAAACTT AGAGATAGTG GGATCAATGA AGTACCACGG CAGTTATTTG CTATTGGGCA TAATATATCC ATTGAGCGAC ATATAAACGT TCTTTCCGAT ATTAAAGAAC AGCCAGTAAT ATTGAGTTCA TTAAACGGTA GCGATACTTA TCCGTTGTTT GAAAGGGTCT GCAAAGTTTA TAAGTTAAAG TTCTCAACAG CTCAAATTAA TAGGCTTTAC CGCATTGCTC AACAATGGAT TCATGGTTTT TCATTAAAGG ATATTATTAA TAATTCTTTG GATAATTGTT CAACTGTGGT TATTTATAGA GGAGGGCCTA TCGAAAACTT CGACCGGACA AATAAGGCTC ATGTTAACGC TATAATCAAT GGGGTCATCT CTTCTATAGA GCATGATATT GGTTATGAAT TGGAGTTATA CATAAACCAT TATTATCAAC ATCTAGTTAA CTCTTTGGGG AGCGAGGGGG CAGGTATCAA TCTTTCAACC TATCTAGAGT TAGGAACAAA TGACAAGTTT GAAATATCAC TACAAAATTA TGGATTTAGT AGATCTGTTG CATCAGAGCT GATCAAGTTC TATAAGGAAT TTATAAAATT TGATGATGAG AACGTTGTTG TATCTATCGA CACTGTAAAT CTTCTCGCAA GATTAGGTAA GAATAGTATT GCTTTTACAG AAGTTGGTAA TGTTTAG
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Protein sequence | MSANITLIDK LTTDSIKSVH FNALYQTLSI AYADSKLKIP SFITSKKTDD LCRYADIFSL SEESEYRVLA YRIIVKLLGV SEKKPALGSM ARSIFTKLGL FFSESRFDKD EHPLPYEREV SNILKRDRQK LPFGNEVFTD SQYEVFTSLT ELDNFSFSGP TSFGKSFIIR SYIFDCISNK KNVVILVPTK VLIEEYIREI RKTIKVEGWG NVNLSKNAQS YIEDKINILI LTPERFNNLI YTDLELSIDV LVVDEAHKLG DDDERSMTSF KVIQETRKRL PTCKVIFSSP VISNPSVFLE SFGLDGRNSI EAIEGPVTQN LFFIDLLNNS SQFYNEVSKE FYTHTKELKI EDMFSFIRSV TSKSSLIYCT SKSGSVSDAV LFAEDLPLLT NPKLVAASKN IKELIHEEYF LSDLLLKGVA FHNADLPKNV RSIIESLYQS REIAYLFCTS TLLEGVNLPT GNLFLRSFKT RGKITNKTKL DFWNLAGRAG RYTKELDGNI FCMRDTSSSW GNISTLVEKK NEVKADTSAL KRLMRGRKII NVLKDGPLNE EKQERIMDQI SNMILSDYME NKQKNHPSSL MNLVPKKFHS GLFKVLEDKL RDSGINEVPR QLFAIGHNIS IERHINVLSD IKEQPVILSS LNGSDTYPLF ERVCKVYKLK FSTAQINRLY RIAQQWIHGF SLKDIINNSL DNCSTVVIYR GGPIENFDRT NKAHVNAIIN GVISSIEHDI GYELELYINH YYQHLVNSLG SEGAGINLST YLELGTNDKF EISLQNYGFS RSVASELIKF YKEFIKFDDE NVVVSIDTVN LLARLGKNSI AFTEVGNV
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