| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3093 |
|---|
| Symbol | |
|---|
| ID | 4624254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 3800391 |
|---|
| End bp | 3801110 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 639798207 |
|---|
| Product | cyclic-di-GMP regulatory protein |
|---|
| Protein accession | YP_944390 |
|---|
| Protein GI | 119946710 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0272737 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAAG GTATTGAATA TACTCACGCA TTTCAACCAA TCATTAATAT TGACGCTGGC
AAAGTGGTTT CTTATGAAGT GTTGTTGAGA GGAAAACATA ATGAACCTCC CGGTTTCATA
TTTGACCAAG TGCCCACTGA AAGCTTAATG GAATTCGATC AAGCTAATCG AGAGCGCGCT
ATAAAGCAAG CTTCTAATCT TGGGCTTGAG TGCAGCTTAA ATTTAAACTT TACACCTGGT
TCTATTTTGT TTGAAGGCGG AAAATATGTG GAGGAGACCA TTGCTGTTTC TCAATATCAC
GGTATAGATG CCAAACAACT CGTCATAGAG ATGACAGAAT GCGAAGCAAT TAATACCGCC
AGCGAGTTGT CGAATGTACT AAATAAATTG CGTAGAACTG GGGTTACAAT TGCACTTGAT
GATTTTGGTT CCGGATATGC CGGTTTAAAC TTGCTCGTAG ATGTGCAGCC TGACTTGATA
AAGCTGGATA TGTATTTGCT AAGGAATATT GATAAAAATG GTCCACGGCA AGCAATCGTC
AGGGCTATAT TTGATGTTTG TCTGGATCTT GGGATAGATG TGCTCGCTGA AGGAGTTGAG
ACCGAAGAGG AATTCGACTT TTTAAATAAA TTAGGAGTGT CCTTATATCA GGGATATCTT
TTTGCAAAGC CAGGGTTTGA GAGTTTTCCG CCTGTTTCAA TCCAATATCT GAAAAGATGA
|
|---|
| Protein sequence | MIKGIEYTHA FQPIINIDAG KVVSYEVLLR GKHNEPPGFI FDQVPTESLM EFDQANRERA
IKQASNLGLE CSLNLNFTPG SILFEGGKYV EETIAVSQYH GIDAKQLVIE MTECEAINTA
SELSNVLNKL RRTGVTIALD DFGSGYAGLN LLVDVQPDLI KLDMYLLRNI DKNGPRQAIV
RAIFDVCLDL GIDVLAEGVE TEEEFDFLNK LGVSLYQGYL FAKPGFESFP PVSIQYLKR
|
|---|
| |