Gene Ping_3005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_3005 
Symbol 
ID4623789 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp3704849 
End bp3705901 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content39% 
IMG OID639798123 
ProductABC transporter ATP-binding protein 
Protein accessionYP_944306 
Protein GI119946626 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.275238 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCACCC TTATTGTTAA TAAATTAAGT TGTTTTTATC AAAAGAACCA AGTGCTTAAT 
TCTCTGGATT TAGAACTCGC AAATAATGAA ATAGTGTGTT TATTAGGGGA GAGTGGCTGT
GGTAAAACAA CCCTGTTAAG GGCGATTGCC GGGTTACAGC TCGATCTTTC CGGCGAGATA
CAAATAAATG CTAAAACCGT TAATAATACA GGCATTAATA TTCCACCGGA AGAACGAAAA
GTAGGTTTGA TTTTTCAGGA TTATGCACTT TTCCCCCATC TTAATGTTTT TGACAATATC
GCGTTTTCAT TACAGAAACT GAGCCGTAGC GAGCAACGAA AACTGGTTAC TGAAGTATTA
ACCCTGGTAC GACTAAAGGA TTATGCCGAT CGTTTTCCAC ATCAACTTTC CGGCGGACAG
CAGCAGCGTA TTGCGATTGC CCGTGCGCTG GCTTATCAAC CTGAATTAAT GCTATTAGAT
GAACCTTTCT CGAACTTAGA CCCGCATGTT CGTTTTCAGT TAATCGATGA AATCAGACAG
TTACTTAAAG CGCATTCCAT GAGCGCATTA TTTGTTACTC ATTCTAAAGA GGAAGGTTTT
GCTTTTGCAG ATAGAATTGC TTTGATGCGG TCGGGTAAAA TAGTGCAGAT TGATACTGCT
CAAATGTTAT ACAGTCATCC CAACTCAAGG TATGTGGCTG ATTTTATGGG CTTGAGTAAT
TATCTCAGGG TCACGGTAAA GGATAAATAC TCTTACCAGT CCGATCTTGG TTTACTCAAC
TGCAATGCTA TTATTGAACA CCCAATAAAT ACACCATTAA CCCTGTTATT ACGACCCGAG
CAGCTCGCAG TTGAAGTTGA TCCCGTTGGC AAAGGGACTA TCAAAAAGGT TGATTTCTTA
GGCGCATACC AGCATGTCAG CATTGTCTAT TTAAGTAAGC ATTATATCGT TAAGCAGAGT
AATCATTATG GTAACTGTAT GCAGTTGAAG GTCGGAGATA AAATTTCGTT GATTGTATTA
AGCCATGATT TTGTTGCCTT CCAAACAGAA TAA
 
Protein sequence
MSTLIVNKLS CFYQKNQVLN SLDLELANNE IVCLLGESGC GKTTLLRAIA GLQLDLSGEI 
QINAKTVNNT GINIPPEERK VGLIFQDYAL FPHLNVFDNI AFSLQKLSRS EQRKLVTEVL
TLVRLKDYAD RFPHQLSGGQ QQRIAIARAL AYQPELMLLD EPFSNLDPHV RFQLIDEIRQ
LLKAHSMSAL FVTHSKEEGF AFADRIALMR SGKIVQIDTA QMLYSHPNSR YVADFMGLSN
YLRVTVKDKY SYQSDLGLLN CNAIIEHPIN TPLTLLLRPE QLAVEVDPVG KGTIKKVDFL
GAYQHVSIVY LSKHYIVKQS NHYGNCMQLK VGDKISLIVL SHDFVAFQTE