Gene Ping_2986 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_2986 
Symbol 
ID4623677 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp3683779 
End bp3685056 
Gene Length1278 bp 
Protein Length425 aa 
Translation table11 
GC content43% 
IMG OID639798104 
ProductABC transporter for branched chain amino acids substrate binding protein 
Protein accessionYP_944287 
Protein GI119946607 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID[TIGR03407] urea ABC transporter, urea binding protein 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.199519 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTTA AAAAGCTTAT TTTAGCCAGT TCAATTGTTG CGACGGGGTT AATGACCAAT 
TTAACCTATG CAGCAGAGAA CATCAAAGTC GGCGTATTAC ATTCTTTATC AGGCACTATG
GCTATCAGTG AAACAACACT CAAAGATACC GTGCTGATGA TGATAGCGGA TCAAAATGCC
AAAGGCGGTC TGCTTGGCAA AAAACTGGAA GCAGTGGTCG TTGATCCAGC TTCAAACTGG
CCTCTTTTTG CTGAGAAAGG ACGCGAGCTG CTTGCCAAAG AAAAAGTCGA TGTTATTTTC
GGCAGCTGGA CTTCTGTATC GCGTAAGTCT GTATTACCTG TCCTTGAAGA GCTCAATGGA
CTGATGTTCT ATCCGGTTCA GTATGAAGGT GAAGAGTCAT CGCAAAATGT ATTTTACACC
GGCGCTGCAC CAAACCAGCA GGCTATTCCT GCGGTTGATT ACCTGATGAA TGATATCGGG
GCAGAACGTT GGGTATTACT AGGTACAGAT TATGTCTACC CGCGTACCAC CAATAAAATA
TTAGAAGCTT ACCTGTTATC AAAAGGGGTC GAAGCGAAAG ATATTATGAT CAACTACACA
CCTTTCGGTC ATTCAGACTG GCAGAATATT GTTGCTGATG TGAAAACATT TGGCTCAACA
GGTAAGAAAA CAGCTGTTGT ATCAACCATT AACGGTGACG CTAATATCCC CTTCTACAAA
GAACTGGGTA ACCAGGGCAT TTCAGCTGAA GATATTCCTG TAATGGCATT CTCTGTCGGT
GAAGAAGAGC TGTCTGGTTT TGATACCACT CCGCTAGTGG GCCACTTAGC AGCTTGGAAC
TACTTCCAAA GTGTTAGAAC AGAAGAAAAC GACAAATTTA TCAAAAGCTG GAAAAAATTT
ATTGGCGATG ATGAACGCGT GACTAATGAT CCGATGGAAG CGACCTATAT AGGTTTCAAA
ATGTGGGTCA AAGCGGTTGA GAAAGCGGGT ACGACGGACG TTGATGCCGT TGAACAAGCG
ATGATTGGCA TAGCAGTACC TAACTTAACC GGCGGCATTG CCGTGATGAA CGCCAACCAC
CATTTATCTA AGCCTGTACT GATTGGTGAA ATTCAAGCAA ATGGTCAGTT TGAAGTCGTT
TGGTCAACAC CTGATACAGT TATCGGTGAT GCATGGTCAG ATTTTCTACC CGTCTCTAAA
GACTTAATCT CAGATTGGAC TGCCCCCGTG AGCTGTGGCA ACTTTAATAT CAAAACAGCT
AAATGCTCTG GTGAATAA
 
Protein sequence
MKFKKLILAS SIVATGLMTN LTYAAENIKV GVLHSLSGTM AISETTLKDT VLMMIADQNA 
KGGLLGKKLE AVVVDPASNW PLFAEKGREL LAKEKVDVIF GSWTSVSRKS VLPVLEELNG
LMFYPVQYEG EESSQNVFYT GAAPNQQAIP AVDYLMNDIG AERWVLLGTD YVYPRTTNKI
LEAYLLSKGV EAKDIMINYT PFGHSDWQNI VADVKTFGST GKKTAVVSTI NGDANIPFYK
ELGNQGISAE DIPVMAFSVG EEELSGFDTT PLVGHLAAWN YFQSVRTEEN DKFIKSWKKF
IGDDERVTND PMEATYIGFK MWVKAVEKAG TTDVDAVEQA MIGIAVPNLT GGIAVMNANH
HLSKPVLIGE IQANGQFEVV WSTPDTVIGD AWSDFLPVSK DLISDWTAPV SCGNFNIKTA
KCSGE