| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2961 |
|---|
| Symbol | |
|---|
| ID | 4623477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 3650873 |
|---|
| End bp | 3654394 |
|---|
| Gene Length | 3522 bp |
|---|
| Protein Length | 1173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639798079 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_944262 |
|---|
| Protein GI | 119946582 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.078928 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCAG AGCAAAGCAC AAGTATTTCA ACTAAACAGC CAAAGTTTAT TCACTTAAGA
GTGCACAGTG ATTATTCGAT GGTCGATGGT GTCACTAAAA TTAAACCCTT GGTTGCTAAA
GCGGCTGCAC TGAATATGCC TGCATTAGCT ATCACCGAAC AAACTAATTT TTGCGGTTTG
GTTAAGTTTT ACGGTGCAGC CCATGATGCC GGTATCAAGC CGATTGTGGG TGTCGATTTT
TGGGTGAAAA GTGAGCTGCT TGCAGATGAA CAGTTTCGTA TTACGGCATT AGCAATGAAT
AATGCCGGTT ATAAAAATCT GACCGAATTA ATCTCGAAAG CTTATTTAAG GGGCCATGTC
GGAGGCCGTG CTGTGATCGA TCAGGACTGG TTGGCTGAGC ATAATCAGGG CATTATTTTA
CTTTCCGGCG GTAAAGATGG CGATCTTGGC AAAGTGTTAT TAAAAGGTAA TCATGAGCTT
GCGGTTGAAA TTATCCAGTT TTATCAACAA TATTTTGCAC AGCGTTATTA CATTGAATTA
ATACGCACCA ATCGCCTTAA TGAAGAAACC TATCTGCATT ACGCCTTAGA CTGGGCTGAA
AAATACCAGC TGCCTGTTGT TGCAACCAAT GAAGTCGTTT TTGCTGATAA AGCGCTTTAT
GATGCCCATG AAATTCGGGT TTGTATTAAT CAGGGTTATA CATTGGGTGA TAATCGCCGT
CCTAAACAAT ACAGTGATGA GCAATACCTG CGTAGCCAGG AGGAGATGTG CGAACTTTTT
GCAGACATTC CCGAGGCGCT TAAAAACAGT GTTGAAATTG CGAAACGCTG TAATGTGACG
CTGCGCTTGG GTGAATATTT TTTACCTGAC TTCCCAACAG GTGATATGTC AATAACGGAC
TATTTTTGTG ACGTTTCACG AAAAGGTTTA GAAGATCGTT TAGCCATTTT ATTTGATAAA
AACGCGCCTG AATTTGCCGA TATTCGTGCC CCCTATGACC AGCGTTTACA AATTGAGTTA
GACGTGATTA ATACCATGGG GTTTCCTGGA TACTTTCTGA TCGTGATGGA ATTTATTCAG
TGGAGTAAGG ATAATAAGAT CCCTGTTGGA CCCGGACGAG GTTCAGGTGC CGGGTCATTA
GTGGCTTATG CACTGAAAAT TACGGATCTT GATCCCCTTG AGCTTGAATT ACTGTTCGAA
CGATTCTTAA ATCCGGAACG TGTTTCGATG CCCGATTTTG ATATCGATTT CTGTATGGAC
AGGCGTGATG AAGTAATCGA TCACGTTGCT GAACTCTACG GGCGAGACGC AGTATCACAA
ATCATCACCT TTGGCACTAT GGCGTCAAAA GCGGTAATAC GCGATGTTGG TCGGGTATTA
GGGCACCCCT ATGGTTTTGT TGATGGCATT TCCAAGCTTA TTCCTCCGAC ACCGGGTATG
ACCTTAAGCA AAGCATTTGC AGAAGAGCCG CGTTTACAGG AACGTTATGA TGGCAGTGAA
GAGGTACGCG CATTAATTGA TATGTGCCGC ACCTTAGAGG GGACCATTCG TAATGCCGGT
AAACATGCTG GTGGTGTGGT TATTTCGCCA ACCACTATTA CGGATTTTTC CCCGTTATAT
TGTGATGAGC TGGGTAATAA CCCGGTGACC CAATTTGATA AAAATGATGT TGAAACCGCA
GGGTTAGTAA AATTTGACTT TCTGGGGTTA CGTACCCTGA CGATAGTGCA ATGGGCGCTG
GATATGGCCA ATGCCCATAA ACATGCCCGT GGTGAAGAGA CGCTCTTTAT TGAAAAAATC
TGTCTGACCG AACCCGCCTG TTTTGAGTTA TTAAAACGTT ATGAAACCAC GGCGGTATTT
CAGCTAGAGT CGCGTGGCAT GAAGGATCTT ATCCGCCGTC TGCAGCCCGA CAGTTTTGAG
GACATGATAG CCTTAGTGGC GCTGTTTCGT CCAGGACCCT TGCAATCGGG CATGGTCGAT
AACTTTATTG AACGTAAACA TGGCCGGGAG GCGGTTTCTT TCCCCGATGA AAAATGGCAG
CATCCATCCT TGGAAGAGAT TTTAGCGCCT ACCTACGGCA TTATTCTCTA TCAAGAACAG
GTTATGCAGA TTGCGCAGGT GTTATCGGGT TACACACTTG GCGGGGCGGA CATGCTGCGC
CGAGCAATGG GTAAGAAAAA ACCTGAAGAG ATGGCCAAAC AGCGTGAGAC TTTTGAGCAG
GGTGCAATTG ATAATGGGAT TGATGGCGAA CTCGCTATGA AAATCTTTGA TTTAGTTGAA
AAATTTGCGG GTTATGGTTT TAATAAATCG CATTCTGCGG CCTACGCTCT GGTGTCATAT
CAAACACTGT GGATGAAAAC CTTTTATCCT TCATACTTTA TGGCCGCTGT TATGTCGGCG
GATATGGATA ATACCGAAAA AATTGTTACT TTAGTGGCAG AGTGCCAGAG TATGGGACTC
GATCTTGGCC CACCAGACGT AAACGAAGGT TTATTCAAGT TTAATGTCGA TCCTGATCTG
CGTATTATCT ACGGTATCGG CGCTGTTAAA GGCGTTGGGG AAGGACCCGT TGATGCGATT
ATCGAAGCGC GGACAGCGGG CGGTAAATTT ATCGATCTGT TTGATTTTTG CAACAGAATT
GATCTTAAAC ACTGTAATAA ACGCATTTTA GAAAAACTTA TTTTAGCGGG CGCACTCGAT
AAACTCGGTC CGCACCGTGC CGCTTTGATG GAAACGTTGC CGAATGCCCT GAAGTCTGCG
CTGCAGCATA AAAAAGCGGA ATCCTTTGGG CAAAGTGATC TTTTTGGTGT TTTAACCACG
GACAGTGAAG AAATTGCGGA TAAATTTTCC TCGGTAGATA AATGGCCGGA GAAACAATGG
TTAGCGGGTG AAAAGGAAAC CCTGGGTTTA TATCTGACGG GCCACCCCAT TAATCAATAT
GAAACAGATA TCCGTGCTTT TCATTGTCTA AAATTATCTG ATCTGGTGGC TAACCGCCGC
GGTCAAAATA GCCGTGTTGC GGGTCTGATT CTAAGTATGC GTATTATGGT GACTAAAGCA
GGTAAACGTA TGGGCATTAT TACCTTAGAT GATAAAAGTG CGCGTATGGA GATTACCGTC
TTTGCCGATT TGCTGGATCA GTATGAAGAT CTTTTGGTCG CTGACAATGT TATTGTCCTG
CAGGGGCAAG TCAGTGAAGA TTATTTTAAC GGGGGGTTAA AAATGAACGC CCGTGAAGTG
ATGAGTATTG AGCAGGCACG TGAGCGTTTT GCTTCAAAAC TGCGTTTAAA AGTCAATAGC
GATAATATTG ATGCTGATTT TCAACGGCTG TTAAAGGAGG CACTGGTCCC TGCCAAAGGC
GGATTATGTC CTGTGTATAT TGAATATACT AATTCACTGG CCCAAACTGA GCTGGTATTA
GCACGACAAT GGTCGATCAC CCCGAGTGAT GATCTTTTAT TTTCATTATC CAGACTGCTT
GGGCCTAAAA ATGTGACTTT GCATTTTGAT CATGTTAACT AG
|
|---|
| Protein sequence | MSAEQSTSIS TKQPKFIHLR VHSDYSMVDG VTKIKPLVAK AAALNMPALA ITEQTNFCGL
VKFYGAAHDA GIKPIVGVDF WVKSELLADE QFRITALAMN NAGYKNLTEL ISKAYLRGHV
GGRAVIDQDW LAEHNQGIIL LSGGKDGDLG KVLLKGNHEL AVEIIQFYQQ YFAQRYYIEL
IRTNRLNEET YLHYALDWAE KYQLPVVATN EVVFADKALY DAHEIRVCIN QGYTLGDNRR
PKQYSDEQYL RSQEEMCELF ADIPEALKNS VEIAKRCNVT LRLGEYFLPD FPTGDMSITD
YFCDVSRKGL EDRLAILFDK NAPEFADIRA PYDQRLQIEL DVINTMGFPG YFLIVMEFIQ
WSKDNKIPVG PGRGSGAGSL VAYALKITDL DPLELELLFE RFLNPERVSM PDFDIDFCMD
RRDEVIDHVA ELYGRDAVSQ IITFGTMASK AVIRDVGRVL GHPYGFVDGI SKLIPPTPGM
TLSKAFAEEP RLQERYDGSE EVRALIDMCR TLEGTIRNAG KHAGGVVISP TTITDFSPLY
CDELGNNPVT QFDKNDVETA GLVKFDFLGL RTLTIVQWAL DMANAHKHAR GEETLFIEKI
CLTEPACFEL LKRYETTAVF QLESRGMKDL IRRLQPDSFE DMIALVALFR PGPLQSGMVD
NFIERKHGRE AVSFPDEKWQ HPSLEEILAP TYGIILYQEQ VMQIAQVLSG YTLGGADMLR
RAMGKKKPEE MAKQRETFEQ GAIDNGIDGE LAMKIFDLVE KFAGYGFNKS HSAAYALVSY
QTLWMKTFYP SYFMAAVMSA DMDNTEKIVT LVAECQSMGL DLGPPDVNEG LFKFNVDPDL
RIIYGIGAVK GVGEGPVDAI IEARTAGGKF IDLFDFCNRI DLKHCNKRIL EKLILAGALD
KLGPHRAALM ETLPNALKSA LQHKKAESFG QSDLFGVLTT DSEEIADKFS SVDKWPEKQW
LAGEKETLGL YLTGHPINQY ETDIRAFHCL KLSDLVANRR GQNSRVAGLI LSMRIMVTKA
GKRMGIITLD DKSARMEITV FADLLDQYED LLVADNVIVL QGQVSEDYFN GGLKMNAREV
MSIEQARERF ASKLRLKVNS DNIDADFQRL LKEALVPAKG GLCPVYIEYT NSLAQTELVL
ARQWSITPSD DLLFSLSRLL GPKNVTLHFD HVN
|
|---|
| |