| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2843 |
|---|
| Symbol | |
|---|
| ID | 4625868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 3494224 |
|---|
| End bp | 3495438 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639797965 |
|---|
| Product | type I secretion membrane fusion protein, HlyD family protein |
|---|
| Protein accession | YP_944148 |
|---|
| Protein GI | 119946468 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTATTTG ATAGTTTTTT TGGAGATGAT GACGCTGGCG GTAAAGAGAA GGCCGCGCGA
TTAGAAGGGT ATTATCGGCG CAATTATTCC GTGGTTTTAT GGGTATTATT ATTAGGTATG
ATAGGGTTTG GCTTCTGGTC AGCAAGCTTT CGTATCGATC AAGTTGCGCG GGCGACAGGT
GAGGTGATTG CCAGCAGCCG TGTGCAGATT ATACAAGCGG TCGATGGAGG CGTCCTGTCG
ACCTTGAATG TTAAAGAGGG CGATCGTGTT GCTAAAGGCG AAGTATTGGC AACGTTAGAT
CAAACGCGTA TTGGTGCGGC GGTAAAAGAA GTCGATGTGC GCTTATCGGC TTTAAAAGCT
AAGGCGACAC GCTTACGTGC TGAAGTGACC GGATCTAAGC GCTTAATTTT TCCGGAAGGG
GTGCAGCGTT TTCCTGATTT AATGAAGGTT GAACGCGCTT TGTTTGAGCA GAAACAAACG
GGTTTATCGG AAGAGTTACG CACCCTTAAG GTAGCCGTTT CATTAGCAGG GGAAGAGGCT
GAATTAATTA AGGAACTGTC TGGCTCGGGT GATGTTAACC GCACAGAAGT TATCCGTTCT
GCGCGGGCCT TAAATGATGC ACAGGCGCAG CTTATTAACC GTAAAAACAA GTACCTTGAA
GAGGTCAGTT CGGAATTGGC AAAAGCGGAG GATGAAATAG CGCAGAATGT GCAGATTTTA
ACCCAGCGTC AGCAGCAGCT AGCCGACAGT GTTTTTATTG CCTCGCTGCC CGGCATTGTT
AAGAATGTGC GTGTAACGAC GTTGGGCGGC GTATTGCGCG GCGGGGATGA ATTAATGCAG
ATTATTCCGG TTGATGATGA GCTGATTATT GAAGCTAAGG TCAGCCCGGC TGATATTGGT
CAAGTGCAAA AGGGGTTGCA GGCCACCATA CGTTTTGATC CCTTTGATTA TACCATTTAT
GGTGGTGTTA TCGGCGAGGT TATCTATGTC AGTGGGGATA CACTAAAAGA AGAGACCGGT
CAGGGGGAAG AAATCTATTA CCGGGTGCAT GTCACAACTC AAACTTCGCC GGTCACCACA
ACGTCAGGTC GGGTATTAGA AATACTGCCC GGTATGACGG CGCAGGTTGA TATTAAAACC
AGTGACAGAA CTGTGCTTAA TTATTTGTTA AAACCACTGC GCAAAACGCT TTCTGAATCC
TTTGGCGAGC GCTAG
|
|---|
| Protein sequence | MLFDSFFGDD DAGGKEKAAR LEGYYRRNYS VVLWVLLLGM IGFGFWSASF RIDQVARATG
EVIASSRVQI IQAVDGGVLS TLNVKEGDRV AKGEVLATLD QTRIGAAVKE VDVRLSALKA
KATRLRAEVT GSKRLIFPEG VQRFPDLMKV ERALFEQKQT GLSEELRTLK VAVSLAGEEA
ELIKELSGSG DVNRTEVIRS ARALNDAQAQ LINRKNKYLE EVSSELAKAE DEIAQNVQIL
TQRQQQLADS VFIASLPGIV KNVRVTTLGG VLRGGDELMQ IIPVDDELII EAKVSPADIG
QVQKGLQATI RFDPFDYTIY GGVIGEVIYV SGDTLKEETG QGEEIYYRVH VTTQTSPVTT
TSGRVLEILP GMTAQVDIKT SDRTVLNYLL KPLRKTLSES FGER
|
|---|
| |