| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2804 |
|---|
| Symbol | |
|---|
| ID | 4626799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 3449259 |
|---|
| End bp | 3450200 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 639797927 |
|---|
| Product | transcriptional regulator, periplasmic binding protein of LacI family protein |
|---|
| Protein accession | YP_944110 |
|---|
| Protein GI | 119946430 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.331827 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA TCATTAGCAA GATTATGATC GCTGGTATTG TGTTGTTGGG AAGCGTCACC
TCTAAAGCCT TTGCTTTAAC GGTTGCAATC AGTTTGGTGG ATCTGTCCAA TCCTTTTTTT
ATTATGCTTG CCGAAGAGAT TTCTGCACAG TTAGAGGCTC AGGTTGAAGG CCAGTTAACT
ATTTATGTGC ATTCAAGTGC CTACGATCTT AATCAGCAAA ACCAGCAAAT TAAAGATTTT
ATTAACAAAG AGGTGGATAT CATTTTCATC TCTGCTTCTG CCAGTGATGC TATTGAACCG
AGTATAATAA GCGCTCGCGA AAAAGGAATA ATAGTCGCCG CAGTAGATAT TGAATCACGG
GGGGCTGATA TCAGCATTAC CTCTGATAAT TTTCAGGCGG GTCAGTTATC CTGCCAATAT
CTAGTGGATA GGCTTGGGGG AAAGGGTGAA ATTGCAATTA TCAATGGTTG GACAACAATA
TCATCAACCA GTAATCGTGT CGCAGGCTGC CGTGATCTAT TAAAAAAATA TCCCGGAATC
AAGCTTGTTT CATACTCTCA CAATGGCAGC GGAAGTTTCA GTGGCGGACT GGAAAGTATG
ACTTATCTTA TGCTCGAATA TCCGAATCTA GAGGCGGTAT TTGCCATTAA TGATCTCGCC
GCCTTAGGCG CAGAAGAAGC GGCCAAACAG TCCGGAAACA ATAAGATCAT AATAGCTTCT
GTGGATGGCT CCCCTTTGTT CTTAGAACAC CTTAAATTAA AAGACAGTCT ATTAGTCGCC
ACCGCTGCAC AGTTTCCTCG CGCGATAGCC CAAAAAGCAG TTATTCTCGC GTTACAAAAA
CTCAGAGAAA CATCCGCAGG CCATACGACA GAGTTAATAC CTACTGAATT AGTGACCAAA
CAGAATGTCA GTCAATTTAG CAACTGGGAT AAAACAAAAT GA
|
|---|
| Protein sequence | MKNIISKIMI AGIVLLGSVT SKAFALTVAI SLVDLSNPFF IMLAEEISAQ LEAQVEGQLT
IYVHSSAYDL NQQNQQIKDF INKEVDIIFI SASASDAIEP SIISAREKGI IVAAVDIESR
GADISITSDN FQAGQLSCQY LVDRLGGKGE IAIINGWTTI SSTSNRVAGC RDLLKKYPGI
KLVSYSHNGS GSFSGGLESM TYLMLEYPNL EAVFAINDLA ALGAEEAAKQ SGNNKIIIAS
VDGSPLFLEH LKLKDSLLVA TAAQFPRAIA QKAVILALQK LRETSAGHTT ELIPTELVTK
QNVSQFSNWD KTK
|
|---|
| |