| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2308 |
|---|
| Symbol | |
|---|
| ID | 4624626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 2805863 |
|---|
| End bp | 2808262 |
|---|
| Gene Length | 2400 bp |
|---|
| Protein Length | 799 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639797449 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_943648 |
|---|
| Protein GI | 119945968 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.816618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCTA ATCAAACCTT AGCCACTATG CTTGACCTTA CTTTGCCAGA CTTAGTGGGT
AAAAATTTGG ATGTGTTGCT GACATCATCC AACCGTTTGC TGTTTCATCT GCAAGTGATG
ACAGTCTTGC ATGTTCAGGG TCATATTGAA GAGATTTCCA TGTCTCTGGC TGGCGCAAAG
GGGATCGATA TTCCGGTCAT TTTTAATGCC GTGCGACGAA ATGTGGACGC AGAGAGCTAT
ACCGAATGTG TAGTCATTCG TGTCAATGAA CGCAAGCGTC TGGAAGATGA ATTGTTTAAT
ATAAAAAAAG CAACCGAACA AGTTCCCGGT GCCCTCTACC AATTTTTGCT CTGTGCAGAC
GGTAGTTCCC GTTTTCCTTA CGCGAGTGAG GGAATACGTA ATGTCTATGA GTTAAGCCCA
CTACAGTTAA AAAAAGACGC AGATTTAGCC TTTAAACGCA TTCACTTGGA TGATGTAGAA
GCGATCCATC AGCAGATTGC CGATTCTGCC AAAAACCTCA CTGTATGGCA TCAACAATAT
CGGGTGGTTT TACCCAAAGC TGGCATCCGC TGGCTGGAGG GGAATGCCAC CCCTGAAGCC
CGGGCCAATG GCAGTACACT ATGGCACGGT TATATTAACG ATATTACCGA GCGAAAAGCA
TTGGAACTTA CGTTGTCCAA TGAATTTGAA CGGACGCGGG TGACGCTAAG TTCTATCGGT
GATGCGGTTA TTACTACCAA TGAACAGCAA GTAGTCGAGT ATATCAATCC CATTGCAGAG
CACCTAACTG GCTGGGCGCT GGCCGACGCC ATAGGTCAAC CCGTAACCAG GGTGTTTAAC
ATCATTAATC AACATACTCG GCTGGTGGCA AAGACCGCCA TTGCTCGTTG TCTGGACGAG
CGTGCCATTG TTGGGCCAGT TTGCGACACA GTATTGCTCA GTAAGGATGG TAATGAGTAT
TGGGTAGAGA AATCTGCAGC ACCGATTTTT GCCCCTGGTG ATGTAATAAT CGGTGTCGTT
ATGGTTTTTC GTGATGTGAC CGGCCAAAAA AGACTGAGGG AGGAAGTGGC GTATCATCGT
GCCAGTCATG ATCATTTGAC TGGACTTGCG AACCGCAGAG AATTTGATCG GATGTTACTT
GAAATGTTTG AGTCATCAAT TTCTCCTGGT GTTGCACATG TATTGTGTTG CATCGATTTG
GATCAGTTTA AACTCATCAA TGACAGCTGT GGACACTTTG CTGGAGACAC TCTATTGAAA
GAGATTTCGG TGGTACTTAC TCAAACCGTG CGTGCTAAAG ATCTGGTGGC GCGTATAGGG
GGGGATGAAT TTGCTATTTT ATTTCAGAGC AGTGATCTGC AAGCAGCTAA ACAAATAGCT
CAAGACGTTT GTGACAAAAT CGCACAAATT CGTTTTCATC ACAAAGATAA ATTTTATCAT
GTTGGTGCCA GCATAGGCGT AGTGCCTTTG GATGGGAGAT GGGATAATGC CGAAGCAGCG
CAACAGGCTG GAGAAATCGC CTGTTTCGCT GCGAAACATG AAGGTCGCGG GCGGGTGCAC
ATGTATACAG ATTTAGACAA AACTGTCATG GAGCAGCGAG ATCAGATGCA GTGGGCATCA
CGCTTGCAAC AAGCCATTGA TGAGAATCGC TTTGAACTTT TTGCCCAACC CATTATGGCA
CTGGATGAAC AAGCAGAACA AGGACTACAT TTTGAGGTTC TGTTGCGCTT ACGTGAGACC
GGTGGAGCGC TGGTCTCGCC TGCGGTATTT ATGGCTTCCG CTGAACAATT TGGCTTAGCC
ACGCAAATCG ATCATTGGGT GGTAAATAAC GTATTAAAGT GGATGAAAAC CCATGCCGAT
GAGTTGGAAA AAGTTCATAT TATTGCCGTA AACTTATCTG GAAATTCGGT TGGTGATCGT
GATTTTCATC AATTTTTGAT CGAGGCATTG GATCACGCTC AGGTACCCGT ACAAAAAATT
TCATTCGAAA TTACTGAGAC AGCAGCAATC GAGAATCTGG ATATCGCCAC TGAGTTTATT
GCGATGGTTC ATCAGCGCGG TGCGAAAATA TCCCTCGATG ATTTTGGCAG TGGTATGTCA
TCAATGGCTT ATCTTAAAAA ACTTCCAGTT GATTATTTGA AAATTGACGG ACAGTTTGTG
AAAGATATGG AAAACGACAC AGTTGATTGT GCGATGGTTC GTAGTATTAA GCAAATTGCG
GATTTAACCG GAAAAATTAC TATTGCTGAG TTTGTTGAAA ATGCGAAGAT ATTGATGTTA
TTAAAAGATA TAGGTGTTGA TTTTGCCCAG GGATATCACA TTGGTAAACC ACAGCCAATC
AATGAAATTT TTGCCTGGAA AAATATAACG AATACAAGAC TAAGCGGTGA AGATCAGTAG
|
|---|
| Protein sequence | MTANQTLATM LDLTLPDLVG KNLDVLLTSS NRLLFHLQVM TVLHVQGHIE EISMSLAGAK
GIDIPVIFNA VRRNVDAESY TECVVIRVNE RKRLEDELFN IKKATEQVPG ALYQFLLCAD
GSSRFPYASE GIRNVYELSP LQLKKDADLA FKRIHLDDVE AIHQQIADSA KNLTVWHQQY
RVVLPKAGIR WLEGNATPEA RANGSTLWHG YINDITERKA LELTLSNEFE RTRVTLSSIG
DAVITTNEQQ VVEYINPIAE HLTGWALADA IGQPVTRVFN IINQHTRLVA KTAIARCLDE
RAIVGPVCDT VLLSKDGNEY WVEKSAAPIF APGDVIIGVV MVFRDVTGQK RLREEVAYHR
ASHDHLTGLA NRREFDRMLL EMFESSISPG VAHVLCCIDL DQFKLINDSC GHFAGDTLLK
EISVVLTQTV RAKDLVARIG GDEFAILFQS SDLQAAKQIA QDVCDKIAQI RFHHKDKFYH
VGASIGVVPL DGRWDNAEAA QQAGEIACFA AKHEGRGRVH MYTDLDKTVM EQRDQMQWAS
RLQQAIDENR FELFAQPIMA LDEQAEQGLH FEVLLRLRET GGALVSPAVF MASAEQFGLA
TQIDHWVVNN VLKWMKTHAD ELEKVHIIAV NLSGNSVGDR DFHQFLIEAL DHAQVPVQKI
SFEITETAAI ENLDIATEFI AMVHQRGAKI SLDDFGSGMS SMAYLKKLPV DYLKIDGQFV
KDMENDTVDC AMVRSIKQIA DLTGKITIAE FVENAKILML LKDIGVDFAQ GYHIGKPQPI
NEIFAWKNIT NTRLSGEDQ
|
|---|
| |