| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2224 |
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| Symbol | yebU |
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| ID | 4624402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 2706992 |
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| End bp | 2708437 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 639797362 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_943564 |
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| Protein GI | 119945884 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[S] Function unknown |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases
[COG3270] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.508935 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCACAGTA AGACCCGACT CCCCCAGGCG TTTATCGATA AGATGACCGG CATTTTACCA
AACCAATTGA AGATAGAAGA TTTTATAGCG GTTTGCCAAC GCCCTCTGCG CCGTGCAATC
AGAGTCAATA CATTAAAAAT ATCTGTTGAA AAATTTCAAA TAAGAGCACA GGAACAGGGC
TGGGTATTAA CAGCAATACC CTGGTGCGCG GAAGGCTTTT GGATTGAACT GCAAGAGGAG
CCAACCCCAC TTGGCAACAG TGCAGAACAC CTTGGCGGTT TGTGCTATAT CCAGGAAGCG
AGTTCAATGT TACCCGTCGC TGCCCTGTTT CATTTTTTCA CCCCCACGAC ACAGTCAATA
GTGCTTGATG CGGCGGCGGC CCCAGGGTCT AAAACCACGC AAATAGCGGC AAAAATGAAC
AACAGCGGAT TGATTATCGG CAATGAATTT TCTTCCAGCA GGATTAAAAT GTTACATGCT
AATATTCAAC GTTGCGGCAT TAAAAACGTG GCCTTAACAC ATTTTGATGC TCGAGTATTT
GGCAAATGGT TACCGGGCAC CTTTGACGCC ATTTTATTAG ATGCGCCCTG TTCAGGGGAA
GGGACTGTCC GCAAGGATAA ATATGCCATG AATAATTGGA GTCAATCCTC TATTAACGAG
ATTGCATCCA CGCAGCAAGA ATTGATCCTC AGTGCTTTTC ACGCACTAAA AGAAGACGGA
ATTTTAATCT ATTCTACCTG CACATTAAGC CACGAAGAAA ATCAGGATAT TTGTTTTTTC
TTAAAAGATA AATTTCCCGA GCATATTGAA TTTTTAGATT TGGAAACCTT ATTTACCGAT
GCAAAAAAAA CCCGCACGGC GGAGGGTTTC TTACATATAT GGCCACAGGT TTATGACAGT
GAAGGCTTTT TTGTAGCGGC CATTAAAAAG ACCAAAGCCT GCACTGTTGC ACCCGCCGTA
AAACGTTTAG GTAAATTTCC TTTTATCAGG CCAACCAGAC AGAAAGAGCA AGCGCTCTAT
GAGTATTTCG CCAGCCAATT TGCCATTACA AATATCAAAG GTATGTTATA TCAGCGTGAT
CAGGAATTAT GGCTGTTTCC AGATCCTATC AAACCCCTGA TTAAGGAGTT GCGGTTCTCG
CGCTTAGGTA TCAAGATTGC CGAAGAATTT GGTAATGGTC GCAAATCAGG CTTTAAAAGC
ACGCATGAAT TTGTAACTTG TTTTGGTGAT TCGATAGACG CTCACAAATT GGAACTCAGC
GCTGAGCAGG CACAAGAATT CTATCAGGGT CGTGATATTC GCGATATTGA CGCTAAGGGG
TTTAAAGGTG AAGTCCTATT AAGTTATCGG GGGCATGTAA TTGGATTAGG AAAATCACTT
GATAATCGCA TTAAAAACAG TTTACCGCGG GAGTTAATTC GTGATAATAA TTTATTTATA
AAATAA
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| Protein sequence | MHSKTRLPQA FIDKMTGILP NQLKIEDFIA VCQRPLRRAI RVNTLKISVE KFQIRAQEQG
WVLTAIPWCA EGFWIELQEE PTPLGNSAEH LGGLCYIQEA SSMLPVAALF HFFTPTTQSI
VLDAAAAPGS KTTQIAAKMN NSGLIIGNEF SSSRIKMLHA NIQRCGIKNV ALTHFDARVF
GKWLPGTFDA ILLDAPCSGE GTVRKDKYAM NNWSQSSINE IASTQQELIL SAFHALKEDG
ILIYSTCTLS HEENQDICFF LKDKFPEHIE FLDLETLFTD AKKTRTAEGF LHIWPQVYDS
EGFFVAAIKK TKACTVAPAV KRLGKFPFIR PTRQKEQALY EYFASQFAIT NIKGMLYQRD
QELWLFPDPI KPLIKELRFS RLGIKIAEEF GNGRKSGFKS THEFVTCFGD SIDAHKLELS
AEQAQEFYQG RDIRDIDAKG FKGEVLLSYR GHVIGLGKSL DNRIKNSLPR ELIRDNNLFI
K
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