| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2204 |
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| Symbol | |
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| ID | 4623841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 2681598 |
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| End bp | 2685089 |
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| Gene Length | 3492 bp |
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| Protein Length | 1163 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 639797342 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_943544 |
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| Protein GI | 119945864 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0607404 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.440495 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGACC TAGCTTTATT ATCTGTTCCC GCATTAAAGA AAAAATCAGA TCGTTTAATA
TTCGGAAATT TATTGGGTAG TAGTCAAGCA TTGGCTATTA GTGAGTGTGC CAAACAACAA
GCATCCCCCT TAATTTTGAT CGTTGATGAT ACGCCCACTG CTTTAAAATT AAGGCAGGAA
CTTGAATTTT TCGTTGAAGA TAACCTTGAA CTAATTACCT TTCCCGATTG GGAAACACTG
CCTTACGATA ATTTCTCGCC TCATCAGGAT ATTATCTCTA ACCGTATCGA AACATTATAT
AAGTTACCAA ATCTTAAAAA TGCCATATTA ATTGTCCCAA TCAGTACGCT GTTACTGCGT
ATCGCCCCCC CTTCCTATTT AAAACAGCAC ACTTTAATAA TAAAAAATAA GCAAAAGATT
GAATTACAAG CATTACGAGC GGATCTTCAA GAAGCGGGTT ATTATGCGGT TGAACAAGTT
ATGGAACATG GCGAGTTCTG CGCACGGGGC TCCTTGTTAG ATATTTACCC TATGGGCAGT
GACACGCCGT ACCGTATTGA TTTTTTTGAT GATGAAGTTG ACTCTATTCG TCCCTTTGAT
AGTGAAAGCC AACGTTCTTT AAAAGCGATT TCGGAAATAA AATTACTGCC CGCACATGAA
TTTGCAACGG ATAAAGACGC TATTAAGCGT TTTAAAGTAC AATTTACCCA TAAATTCACC
TCACCGTTAT CAACCGGTAA CGACTCTGTC TTTGAGCAAA TTAGTCAGCA TAATTTACCT
GCGGGTATTG AATATTATTT ACCCCTTTTT TTTGCTGACA CTGCAAGCTT ATTTGATTAT
TTCCCAAGTA ATGCCAGACT AGCAATTGCG GGTGATATTA ATCAAGCCTG TAGCGATTTT
TGGAAAACCA TCTCCACCCG TTATCAAGAA AAATCTGTTG ATTTATTCCG CCCTTTATTG
CCGCCCGAAG AGTTATATCT GCGCCATGAG CAGTGTTTTG AACTTATAAA CCAGTGGCCT
CGTTATGACT TTCGTACGCA ACCTTTTGAA CACCCAAAAA ACACCAAGCA GAACTGCGCA
ATACAAGCCG TTCCTGATAT TCAGATTGAA CATAACAAAA ACGCGCCATT GCAGAAGCTC
CAACATTTCA TCACAAATTT TACCGGTAAA GTATTATTTA GCGTTGAATC AGCGGGACGT
AAGGAGTCTT TATTAGAGTT ATTAGCCACC TTAAAATTAC CCCTTAGCGA ATTCTCTACC
CTGACCTCTT TTACTAAAAG TAAGAAACAA CTTGGCATTA CCATCAGTCA AGTTGAAAAC
AGTTTTATAT TAACGGATAC TGATTTTGCA TTTGTGACAG AAAATGAATT ATTAGGCCAT
AAAGTCACAC AACGACGTCG ACGTAAAGAA AATAACGATG AGAATTACAG CGCTGATCAT
ATCGTGCGTA ATTTGGCAGA GATTAAAATA GATCAGCCAG TTGTTCATAT TGATTATGGT
GTGGGTAAAT ATTTAGGGCT GGAAACAATA GAAACTGCTG GTCACTTAAC TGAATTTGTT
AAATTGGAAT ATCTGCGCGG TGATAAACTT TACGTCCCCG TAAGCTCTCT CCAATTAATC
AGCCGCTATA GCGGTCATGA TGTAGAAAAT GCCCCCATTA ATAAATTAGG CACGGAAACG
TGGCAAAAAG CCAAAAAACA GGCCGCAGAA AAAGTGCGGG ATGTCGCCGC AGAACTGCTT
GAAGTTTATG CACAACGGGC AGCCAAGGTC GGCCATCAAT ATAAGCTTAA TAAAACGCAT
TATGCGCTAT TTAGCAACGA CTTTCCTTTT GAAGAAACCC ATGATCAGGC TCTTACCATA
AAGGCTGTTA TATCTGATAT GTGTTCTTCA CAGCCGATGG ACAGGCTGGT TTGTGGTGAT
GTAGGTTTTG GTAAAACCGA GGTGGCAATG CGTGCGGCCT TTATCGCCAC CGATAATTTA
CGCCAGGTTG CTCTTTTAGT ACCAACAACC TTGCTCGCAC AGCAGCATTA TGAAAATTTT
AAAGATAGAT TTGCCGACTG GCCAGTGCGT ATCGAAGTCC TTTCGCGCTT TAAAACAGCA
AAACAGCAGA AACTTATTCT GGAAGAAGTA AACCAGGGAA AAATTGATAT ACTGATCGGT
ACACACAAAC TGCTCAGCAG CAATGTGCAA TTTGCTGATT TAGGGTTGTT AATTATTGAT
GAAGAGCATC GATTTGGCGT ACGCCAAAAG GAAAAAATCA AAGCCTTGCG GGCACAAATT
GACATTTTAA CGCTAACAGC TACTCCCATT CCAAGAACAT TAAATATGTC GATGAATGGC
ATGAGAGATC TTTCAATTAT CGCAACGCCG CCAGCAAAAC GCTTAGCGGT AAAAACCTTC
GTCGTACAGA AGAAAGATCA AATTATAAGC GATGCAATAA CCCGTGAAAT TATGCGTGGC
GGACAAGTTT ACTTTTTACA TAATAACGTT GCTACTATCG AAAAAGCAGC TCACGATATA
CAGCAGCTTA TACCACAGGC AAAAGTGGCT GTTGCTCACG GGCAAATGAA TGAACATCAG
CTTGAAAAAA TCATGGCTGA CTTTTACCAT CAGCGACAAA ACGTGTTAGT TTGCAGCACT
ATTATTGAGA CAGGTATTGA TATCCCCAGT GCCAATACTA TTATCATCAA TCGTGCCGAC
CATCTTGGTC TTGCACAATT GCATCAACTG CGCGGGCGGG TTGGCCGTTC ACATCATCAA
GCCTATGCGT ATCTTTTAAC ACCAAAACCC AAGCTAATGA CCAAAGATGC ACAAAAAAGG
CTGCAGGCGA TCGAAGCGTT AGATACCTTA GGGGCAGGTT TTACTCTGGC CACTCACGAT
TTAGAAATTC GCGGCGCGGG TGAGTTATTG GGCGATGAAC AATCGGGGCA AATTGCCAGT
ATTGGTTACA ATCTGTATAT GGAAATGTTA AATCAAGCGA TTGAGGCATT AAAAAATGGT
CAGGAGCCTA CATTAGAGCA CCTTATGGCA AGCCAAGCGG AAGTTGAACT GCGTATCCCT
GCCTTGATTC CAACGGATTA CATGCCTGAC GTTAATCAGC GCTTATCACT GTATAAGCGT
ATCGCTGGCA GTAAAAATAA ACTTGCATTA AGAGAAATTC AGGTGGAATT AATAGATCGC
TTTGGCCTAT TACCCGCTTC GACTAAAAAT CTTATCCAAG TGGCGACAAT AAAACAGCAG
TGTACGCCAT TAGGCATTAA ACGTTTAGAA GCACATGCGA ATGGTGGTAA TATTTTATTT
ACAGAAAATA CACCAGTGGA TCCAATGTTT CTGGTGTCAT TGCTGCAAAC ACAGGCAAAT
ACATTTAAAC TAGATGGCCC CACTAAACTT AAATTTATTT GCGACCTGTC GGACAGCAGG
CAACGAATCA ACTGGATTAT GCAATTACTG CATAGTTTTG AATCACATTT AATAAAAAAA
GCTAAAGGAT AA
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| Protein sequence | MTDLALLSVP ALKKKSDRLI FGNLLGSSQA LAISECAKQQ ASPLILIVDD TPTALKLRQE
LEFFVEDNLE LITFPDWETL PYDNFSPHQD IISNRIETLY KLPNLKNAIL IVPISTLLLR
IAPPSYLKQH TLIIKNKQKI ELQALRADLQ EAGYYAVEQV MEHGEFCARG SLLDIYPMGS
DTPYRIDFFD DEVDSIRPFD SESQRSLKAI SEIKLLPAHE FATDKDAIKR FKVQFTHKFT
SPLSTGNDSV FEQISQHNLP AGIEYYLPLF FADTASLFDY FPSNARLAIA GDINQACSDF
WKTISTRYQE KSVDLFRPLL PPEELYLRHE QCFELINQWP RYDFRTQPFE HPKNTKQNCA
IQAVPDIQIE HNKNAPLQKL QHFITNFTGK VLFSVESAGR KESLLELLAT LKLPLSEFST
LTSFTKSKKQ LGITISQVEN SFILTDTDFA FVTENELLGH KVTQRRRRKE NNDENYSADH
IVRNLAEIKI DQPVVHIDYG VGKYLGLETI ETAGHLTEFV KLEYLRGDKL YVPVSSLQLI
SRYSGHDVEN APINKLGTET WQKAKKQAAE KVRDVAAELL EVYAQRAAKV GHQYKLNKTH
YALFSNDFPF EETHDQALTI KAVISDMCSS QPMDRLVCGD VGFGKTEVAM RAAFIATDNL
RQVALLVPTT LLAQQHYENF KDRFADWPVR IEVLSRFKTA KQQKLILEEV NQGKIDILIG
THKLLSSNVQ FADLGLLIID EEHRFGVRQK EKIKALRAQI DILTLTATPI PRTLNMSMNG
MRDLSIIATP PAKRLAVKTF VVQKKDQIIS DAITREIMRG GQVYFLHNNV ATIEKAAHDI
QQLIPQAKVA VAHGQMNEHQ LEKIMADFYH QRQNVLVCST IIETGIDIPS ANTIIINRAD
HLGLAQLHQL RGRVGRSHHQ AYAYLLTPKP KLMTKDAQKR LQAIEALDTL GAGFTLATHD
LEIRGAGELL GDEQSGQIAS IGYNLYMEML NQAIEALKNG QEPTLEHLMA SQAEVELRIP
ALIPTDYMPD VNQRLSLYKR IAGSKNKLAL REIQVELIDR FGLLPASTKN LIQVATIKQQ
CTPLGIKRLE AHANGGNILF TENTPVDPMF LVSLLQTQAN TFKLDGPTKL KFICDLSDSR
QRINWIMQLL HSFESHLIKK AKG
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