| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2088 |
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| Symbol | |
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| ID | 4627010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 2540879 |
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| End bp | 2543590 |
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| Gene Length | 2712 bp |
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| Protein Length | 903 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 639797234 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_943436 |
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| Protein GI | 119945756 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.517647 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.583214 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCTGATC CCATTAAAAA TCTATTGTAT CTTGGAGACA ATATTGCCCT TATTGATACA
TTGTTTAACT CATTTTTTAC GGATGAAAAA ACAGATAACT ATCACGTTTT TCATTTAGTG
AGTGGCGTGC AACTCTGCCT GACTTTATCG GAAAATAATT TTAGCCACTT CATATCAGAA
CGCCCCCTTA ATACAGATAT AAAAGATAAA ATTAAAGCAG ATTTTCCCTT GTTAAAGACA
ACCTACCTGA ATGCAGATGA CGAGCCCAAA GAAACCAAGT TATCCGTTGA CGTTGAAAAT
ATTTTTACTG ATGAGGTTAA AGCCCTCTTA GAATCTCTTA GTATTCCCAT CTATTTTAAA
AATAAACAAG CACAATATTT AGCCTGTAAT CACCATTTTT CCAAGCTGTT AGGTCTCTCT
CCCGCACAAA TTATCGGGAA AACATTTGCT GAGCTATCTG ACTCTCCTTT AAAGGATGAA
ATCGAAAAGA TAGATCCACA AATGTTTACT GATCATCAAG TTGGCTTGCA TGAATATAGA
GGGACTAATA AAGTGGGTGA AAAGCATGAT CTTCTCTTTT ATAACGAGTT CACCGCTAAC
GGAAAAATGC AAAGTGGACT TATTTTTGAT ATTACAGAGC TCAATAAGTC AAAATATTTA
TTAGAAAAAC AGCGAAGGAT ACTGCGCGCG ACGGTAGATA TTTCTCCAGA TATGATCTCT
TATAAAGACT TAAAAAGTCG CATATTAGGC GGTAATAGTC CGTTTGAGAA ATTTGTGGGT
TCTTTGGAAA AGGAGGTTTT GGGTAAAACA GTGTATGATT TTTTCCCATT GGAACAAGCG
ATAGCGTCTA TAAAGCACGA CCAAAAAGTT ATAAAAAATA ATAAAGTTAA TGTACAGGAA
GTCATTTCCA CTGATGATGA TGGCGAACGT CATTTGCTCA ATATGAAAAA AATACCCGTG
CAGGATAAAC AGGGAGATGT ACAAGGGTTA ATTTCTGTTG GCCGGAATAT GACCGAGCAG
CGAAAGACAC AGAAGCGCTT TGAGATTGCG GATGCTGTCT TTGAAAACAG TAAAGAGAGT
CTGATCGTAA CCGACGAGGA TGGCAGGATA ATTTCAGCCA ATGACCACGC TTGTATTGTT
TTTGGTTATA GTAAAGAGCA ATTATTGGCG CAAGAGATCA ATATATTAGC TTCTGAGACC
CATGATGGTG CATATTATAA AAATATTGAA CAGCTTTTAG AAGCAGACGG TTCCTGGCAG
GGAGATATCA CCTACCGCAC CAAGATTGGT GATGTTTGTC ACGCCTGGTT AGAGGCCTAT
GAGGTCCAGC ACACGCAGGA AAACAGGGTT GAGCGAGTCT ATTCTTATAC CGATTTAACG
CACTTTCAAG TAACAGATAA AAAAATTAGC TTCTTATCAA AACAGGATCC GTTAACAGGA
TTACATAATC GAATATCCCT GTTTAGCCGA TTGGAAGATA GATTAACACG TGCGAATTAT
CAGCACAGCG CGGTGGCGGT TATATTAGTT GATATTGATG ATTTTAAGGC GATTAATAAT
AAGTATGGGC ATAATGGCGG TAATCAGATT TTAAAGGAGG TTGCTAGGCG TCTAAAAAAC
TGTCTTTATG GAAAATATAC CCTGGGCCGT TTTGTTAAGG ATCAATTTAT TATTATCATT
GACGAATTAG CCAGTGAACA CGATGCAGCT ACGGTTGCGC GTCAAGTAAC AGATCAGTTT
AGCAGCGCAT TTATCATCGA AAACGTTCAC AAAAATATTA CCGCAAGTAT CGGTATCAGT
CTTTCTCCAG ATGATGGGAT TGAGGTTGCT CCCCTCTTTT TGAATGCTGA AAAAGCGAAG
CGACATAGTA AAAACAGCAA AAGTACAGTA TACAATTTTT ATACCCCTGG CTTGACGCTT
GGTTTGAATA AAGAGTTTGA ATTAGAAAAA GAGCTAAAAC AGGCATTATT GTCAGATCAG
TTAGATTTGT ATTACCAGCC GCAATACGAT CTTAGTAAAC GGCAAATCGT TGCGCTGCAA
GGTTTACTGC GTTGGCATCA CCCCAAGCGT GGAATATTAC TGCCAGAGCA CTTTTTGAGT
GTGGCTGAAG GCAGCCATTT GTTAGTCCCC ATTGGTTGGA AAATGATCCG TAAAGCCTGC
TTAAAAGCGG TTTCCTGGGA AAATGCTCAG TTTAAATTTG GCCGGATTGC TATTGATCTA
TTCAAAATAC AATTATCACA AATTAGCTTT ATTGCGGAGC TACAAACTAT TTTAAAAGAA
ACGGGCTGTT CAACCGGGCA GCTTGAATTT CTGGTTGATA AGGCGATTCT TTGCGACGCC
TCAGCAGATA TTCTGTCGAA TCTGGATAAT GCTAATAAGA TGGGATTTAC ACTGACCGTG
ACCAATTTTG GCATGGCCGA GGATGTTATC GATTTAATTG ATCGGCTGGG CGTTGCAAAC
TTAAAAATAT CAGACCCGCA GATTAAAAAT GCTTCAGGAT CCTTAGCGAA TAACGCACAA
TTAAAATCCG CTAATGTTTT TGCGAGCAGC TTAGGTATTA ATATCCTTAG TGATACTCTG
GACAATGCCG AACAGAAAGA ATTTTCAACC TTCAATCGGC CCGATTCCGG AAAAGCAAAG
GTTGTTGTTC ATAAAAAAGT AATGAGCGCC TCTGAGGCGA CCTTTTACCT GCATTGTAAT
AAACATAGAT AA
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| Protein sequence | MSDPIKNLLY LGDNIALIDT LFNSFFTDEK TDNYHVFHLV SGVQLCLTLS ENNFSHFISE
RPLNTDIKDK IKADFPLLKT TYLNADDEPK ETKLSVDVEN IFTDEVKALL ESLSIPIYFK
NKQAQYLACN HHFSKLLGLS PAQIIGKTFA ELSDSPLKDE IEKIDPQMFT DHQVGLHEYR
GTNKVGEKHD LLFYNEFTAN GKMQSGLIFD ITELNKSKYL LEKQRRILRA TVDISPDMIS
YKDLKSRILG GNSPFEKFVG SLEKEVLGKT VYDFFPLEQA IASIKHDQKV IKNNKVNVQE
VISTDDDGER HLLNMKKIPV QDKQGDVQGL ISVGRNMTEQ RKTQKRFEIA DAVFENSKES
LIVTDEDGRI ISANDHACIV FGYSKEQLLA QEINILASET HDGAYYKNIE QLLEADGSWQ
GDITYRTKIG DVCHAWLEAY EVQHTQENRV ERVYSYTDLT HFQVTDKKIS FLSKQDPLTG
LHNRISLFSR LEDRLTRANY QHSAVAVILV DIDDFKAINN KYGHNGGNQI LKEVARRLKN
CLYGKYTLGR FVKDQFIIII DELASEHDAA TVARQVTDQF SSAFIIENVH KNITASIGIS
LSPDDGIEVA PLFLNAEKAK RHSKNSKSTV YNFYTPGLTL GLNKEFELEK ELKQALLSDQ
LDLYYQPQYD LSKRQIVALQ GLLRWHHPKR GILLPEHFLS VAEGSHLLVP IGWKMIRKAC
LKAVSWENAQ FKFGRIAIDL FKIQLSQISF IAELQTILKE TGCSTGQLEF LVDKAILCDA
SADILSNLDN ANKMGFTLTV TNFGMAEDVI DLIDRLGVAN LKISDPQIKN ASGSLANNAQ
LKSANVFASS LGINILSDTL DNAEQKEFST FNRPDSGKAK VVVHKKVMSA SEATFYLHCN
KHR
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