Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_2019 |
Symbol | lacZ |
ID | 4624702 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | + |
Start bp | 2457541 |
End bp | 2460648 |
Gene Length | 3108 bp |
Protein Length | 1035 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 639797180 |
Product | beta-D-galactosidase |
Protein accession | YP_943382 |
Protein GI | 119945702 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0466092 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAGAGT TTTCAGAAAT AATTAAGGCC CGTGACTGGG AAAACCAAGA GGTAACGCAC CAACATGTTG TTCAAGCACA TGCCCCTTTA CATGCTTTCC ACTCAAAACA GGCCGCACTT GATAATCAAG CTTCAGAATT TCAACAATTA TTAAACGGCC AATGGCGCTT TCAGTTATTT GCTAAACCGG AAGCAGTCCC CAATCATTGT ATTAACATTG ATTTTGATGA TAGCGCCTGG TCTGATATCA CTGTACCAAG TAACTGGCAG CTGCAGGGTT ACGATAAGCC TATTTATACC AATGTGAAAT ATCCCTTTGC AGATAATCCA CCTTTTGTCC CTGCTGATAA TCCGACCGGC GTATACCGCT TAAATTTCAC TTTGCCAACT GCCTGGAAAG AACGTAAAAA CACGGTCATT TTTGATGGAG TCAACTCGGC TTTTCACCTT TGGTGTAATG GTATTTGGGT CGGTTATTCT CAAGACAGTC GTTTACCCGC AGAATTTGAT TTAAGCTGCC ATCTGCAGGC GGGAGACAAT CAGTTAACCG TGATGGTATT GCGTTGGTCC GACGGCTCCT ACCTTGAAGA TCAGGATATG TGGTGGTTGA GTGGTATTTT TCGCGATGTT TGCCTGCTCA GTAAACCGCT TATCTCTATT CGCGATATTA CCGTTAGCAC AGAGTTAGAT GCCTGCTTTA ATCATGGCAG TATCAATGTA GTGACTCAAC TGAGTGAACA AAGTAGCCAA TACACTGCTC AGGTACAGCT ATTTGATGCG CAATTACAGC CCGTTACTAA GCTTGTCGGC GCACCCTTTG GGGAGCGCAT GATTGACGAG AAAGGCCCGG CAAACGATCG AGCCGAACAT AAAATTGCAG TACCATCACC GCATAAATGG AGTTCAGAAT CGCCTTATTT ATATCGTGTG GTTATTTCCC TGGTCGATAA TGAGGGCCAA GTTGTCGACA GTGAAGCTTA TCAAGTCGGT TTTCGTGTTG TTGAAATGAG TAATGGCCAG CTTAAACTTA ATGGTGAAGC ATTATTAATT CGCGGCGTTA ACCGTCACGA GCATCATCCG GAAAAAGGTC ATGCGATTTC TTATGAAGAT ATGCTTGTAG ATATTAAGCT GCTTAAACAA AACAATTTCA ATGCGGTGCG CACTGCGCAC TATCCTAATC ACCCGCTATG GTATGAATTG TGCGATCAAT ATGGTTTGTA TGTTGTTGAT GAGGCCAACC TTGAAACCCA TGGACAATTT CCAATGTCAC GTTTGTCCAA TGATCTTAGC TGGTTAAATG CGTATATGCG CCGCATGACA CGAATGGTTG AGCGTGATAA GAACCACCCT TCTATTATTA TATGGTCATT AGGTAATGAA TCCGGTCTTG GTCATCATCA TCATGCCATG TATCAGTGGA CTAAACGCAG AGATCCAACC CGCCCTGTGC AGTATGAAGG TGGCGGTGCA GACACGGCTG CCACGGATAT TATCGTGCCT ATGTATGCCC GCGTCAATAA AGACATCACC CTGCCTAATG CCCCCGATGT GGTGCCTAAA ATGGCGATTA AAAAATGGCT GTCGATGCCC AATGAACAGC GCCCTTTGAT CCTCTGTGAA TATGCACATG CCATGGGCAA CAGCTTAGGC AGTTTTGATA AATATTGGCA GGCCTTTCGT GAATATCCCC GTCTGCAGGG CGGATTTATT TGGGACTGGG TTGATCAGGG TTTAACTAAA ATCGATGACA ATGGGGATAA TTACTGGGCA TACGGAGGGG ATTTTGGCGA TCAAATCAAC GATCGACAAT TTTGTATTAA TGGCCTTGTT TTCCCTGACA GAAGTCTACA CCCGACCGTT TATGAAGCCA AAAAAGCGCA GCAATTTTAT CAATTTAGCC TGGTTGATGG TGATCAGCTC AAGGTTAAAA TCGACAGTGA AAATTTATTT ATCGAAAGTA TGGATGAAAC ACTTTGCTGG TCGGTCACCG AAGCGGGTTA TGTTATCGCC TCGGGTGAGA TGGAATTACA TGTCACAGCT CAAAGTTCAA AGATTTTAAC CTTACTTGAA AGCTACCCCG AACAAAAAAT AGGCTGTGAC TATTTCCTTA ATATTGAAAT TGTATTAAAT AAGGATAAAC CCTGGGCTAC GAAAGGTTTT GTTGTTGCCA CTGAGCAAGT TGCATTAGCA TCGATTGCAC AATTGACGAA TGTGCCCTTG ATTGAGTCAG GTGCGCCGAG ACTGAGCGAA GACAAAAACA AGATAACCGT GGCAGGTACA GGTTCCGGCG CAGAATTTGA GCTTGAAATA GACAAACAGC AAGGTGTGAT CAGTCAATGG TTAGTGCGCG GTGAAAATAA AATTTTACAG GGACCCAAGG ATAACTTTTT CCGTGCGCCT CTGGATAATG ATATTGGTAC CAGTGAGGCT GACTGTATTG ATCCAAATGC GTGGGTGACA CAATGGGACA CGGCAGGAAT AGCGAATCTG GTGCCTCACT GTATCGCGAT AGAGGCGGTT ACCTTGGCCC GGAGTGTGCT TGTTAAGGTG GAGTTTGGTC ACTACGTTGA GAATAAGCTA TTAATTTCCA GTCACTGGCA ATACACCATA AATAACCAGG GAGAAGTACA GATTGATGTT AATGTTAATC TTGCTAAATC ACTATCACCG TTACCACGAA TTGGGCTGGA ATTGATTCTG CCTGATAGTG AAAAGCCAGT TAATTGGTTT GGTCGTGGCC CCCATGAAAA TTATCCCGAT AGGATTTTAT CTGCACACAT TGCTCGCCAT TGCTGCTCTA TTGAAGAAAT GCATACGCCT TATATTTTCC CGTCTGAAAA CGGTTTACGT TGTGATGTAA AGGATGCAAT AGTTGGCGAT TTAACCGTAT CAGGTGATTT TCATTTAGCG GTAAGTCGCT ATAGTCAAAT GAATATTGCG CAGGCCAAAC ACGTTAATGA CCTCATTAAC GACCACCAGC TTTATGTCCG TTTAGATGCT TTTCATATGG GCGTGGGCGG CGATGATTCC TGGAGTCCAA GTGTGCATGA CGAGTTTCTT TTAAATAAGG AGCACTATCA TTACCAGATG ATTCTGGCAT TTAATTAG
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Protein sequence | MREFSEIIKA RDWENQEVTH QHVVQAHAPL HAFHSKQAAL DNQASEFQQL LNGQWRFQLF AKPEAVPNHC INIDFDDSAW SDITVPSNWQ LQGYDKPIYT NVKYPFADNP PFVPADNPTG VYRLNFTLPT AWKERKNTVI FDGVNSAFHL WCNGIWVGYS QDSRLPAEFD LSCHLQAGDN QLTVMVLRWS DGSYLEDQDM WWLSGIFRDV CLLSKPLISI RDITVSTELD ACFNHGSINV VTQLSEQSSQ YTAQVQLFDA QLQPVTKLVG APFGERMIDE KGPANDRAEH KIAVPSPHKW SSESPYLYRV VISLVDNEGQ VVDSEAYQVG FRVVEMSNGQ LKLNGEALLI RGVNRHEHHP EKGHAISYED MLVDIKLLKQ NNFNAVRTAH YPNHPLWYEL CDQYGLYVVD EANLETHGQF PMSRLSNDLS WLNAYMRRMT RMVERDKNHP SIIIWSLGNE SGLGHHHHAM YQWTKRRDPT RPVQYEGGGA DTAATDIIVP MYARVNKDIT LPNAPDVVPK MAIKKWLSMP NEQRPLILCE YAHAMGNSLG SFDKYWQAFR EYPRLQGGFI WDWVDQGLTK IDDNGDNYWA YGGDFGDQIN DRQFCINGLV FPDRSLHPTV YEAKKAQQFY QFSLVDGDQL KVKIDSENLF IESMDETLCW SVTEAGYVIA SGEMELHVTA QSSKILTLLE SYPEQKIGCD YFLNIEIVLN KDKPWATKGF VVATEQVALA SIAQLTNVPL IESGAPRLSE DKNKITVAGT GSGAEFELEI DKQQGVISQW LVRGENKILQ GPKDNFFRAP LDNDIGTSEA DCIDPNAWVT QWDTAGIANL VPHCIAIEAV TLARSVLVKV EFGHYVENKL LISSHWQYTI NNQGEVQIDV NVNLAKSLSP LPRIGLELIL PDSEKPVNWF GRGPHENYPD RILSAHIARH CCSIEEMHTP YIFPSENGLR CDVKDAIVGD LTVSGDFHLA VSRYSQMNIA QAKHVNDLIN DHQLYVRLDA FHMGVGGDDS WSPSVHDEFL LNKEHYHYQM ILAFN
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