Gene Ping_2015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_2015 
Symbol 
ID4626521 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp2452892 
End bp2453911 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content47% 
IMG OID639797176 
ProductUDP-glucose 4-epimerase 
Protein accessionYP_943378 
Protein GI119945698 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1087] UDP-glucose 4-epimerase 
TIGRFAM ID[TIGR01179] UDP-glucose-4-epimerase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.714124 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTAT TAGTGACAGG GGGAATGGGT TACATAGGGA GCTTGACCTG CATACAAATG 
ATTGAAGCCG GTATCGAGCC TATTATTGTC GATAATTTAA GCAACAGTAA ATTGACTGTA
TTAGATCGTA TTGAAGCGTT AACGCAGATT CGCCCTCTTT TTTACCCAGG TGATGTTCGT
GATCAGCATC TATTAGATCG TATTTTCAGC GAACACGATG TTGACTCGGT TATTCACTTT
GCCGGGCTCA AATCCGTCGG TGAATCGGTA CAGAAACCAC TCGAGTACTA TGATAACAAT
GTGAATGGAT CGCTGGTGCT GGCTGGTGCG ATGCGTAAAG CCTGTGTGAA AAGTTTAGTC
TTTAGCTCAT CAGCAACCGT TTATGGCGAT CCGGCGGTCG TGCCGATCAC TGAAAGCTCA
CCAACGGGTG CGACCACAAA TCCCTACGGC CGCAGTAAAT ATATTGTTGA ACAGTGCCTG
TCTGACTTGT TTGCCGCAGA GCCCGATTGG AGCATTACCT TATTGCGTTA TTTTAATCCT
GTCGGCGCCC ACCCATCGGG CACTATGGGT GAAGATCCAG AAGGGATTCC AAATAACTTA
ATGCCCTTTA TTGCACAAGT TGCCGTTGGA CGTCGTAAAT CCTTAGCCGT CTTTGGTGAT
GATTACCCAA CAGCAGATGG TACGGGTGTA CGCGATTATA TCCACGTCAT GGATCTGGCA
GACGGACATA TTGCAGCACT TAAAGCCGTG GGCAAAAAAG CAGGCTTACA TATTTACAAT
TTAGGCACAG GCAAAGGCAG CAGTGTTCTA GAAATGATCG ATGCCTTTTC TAAGGCCTGC
GGTAAACCTG TCGCTTATAA TATTTTCCCG CGACGCGCCG GTGATATTGC GCAGTGCTGT
GCTGATCCCC AAAAAGCACA AAAAGAGCTG GGCTGGAAGG CAAACCGCAC AATCATGGAG
ATGACCAAAG ATACCTGGCA CTGGCAATCG AAGAATCCAC AGGGTTACTC AAAAGCTTAA
 
Protein sequence
MKVLVTGGMG YIGSLTCIQM IEAGIEPIIV DNLSNSKLTV LDRIEALTQI RPLFYPGDVR 
DQHLLDRIFS EHDVDSVIHF AGLKSVGESV QKPLEYYDNN VNGSLVLAGA MRKACVKSLV
FSSSATVYGD PAVVPITESS PTGATTNPYG RSKYIVEQCL SDLFAAEPDW SITLLRYFNP
VGAHPSGTMG EDPEGIPNNL MPFIAQVAVG RRKSLAVFGD DYPTADGTGV RDYIHVMDLA
DGHIAALKAV GKKAGLHIYN LGTGKGSSVL EMIDAFSKAC GKPVAYNIFP RRAGDIAQCC
ADPQKAQKEL GWKANRTIME MTKDTWHWQS KNPQGYSKA