| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2006 |
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| Symbol | |
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| ID | 4627212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | - |
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| Start bp | 2440028 |
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| End bp | 2442202 |
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| Gene Length | 2175 bp |
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| Protein Length | 724 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 639797167 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_943369 |
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| Protein GI | 119945689 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.332381 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTAATA AAACGCCACA GATTAATAAT CAACAAGATG ATAATAACGC ACGGTTAGAG
CTTGTTATTA ATGCTACCGG TGTGGGTATA TGGGATTGGC AGGTTCAAAC CGGGGAGTTA
ACATTCAATA AACGCTGGGC AGAAATTATT GGTTATACCT TTGATGAATT ACAACCTATT
CAATTTGACT CTTGGGCTAG TAACCTTCAC CCCGATGATT TAGTAAAAGC TAAAAGTCTA
CTAGCACAAC ATTTTAACGG TGAAATCGAT TTTTATGAGC TTGAAGCTCG AATGAAGCAT
AAATCGGGGC ACTATGTGTG GGTGCTGGCT TCGGGGAAAT TAGTCGAAAG GGATGAGCAA
GGTAAGCCAA AGCGCATGAT CGGTACGCAC TTAGATATTA ATGAACGAAA AAATAACGAA
GAGTTGATGA TTGTAACCAG TCAGTTGCTG AATGAATCAC AGCAAATAGG GCGCTTGGGA
GGATGGAAAT TAGATTTAAA AACAGGTGAT TTGTTTTGGA CCGATGAAAC TTACCGAATA
CATGAAACGT CTCCAGAGGA GTTTAATCCT ACGGTCGATG CTGGTATCGG TTATTTTTTG
CCTGACTCGC AAAAGATTAT TTCTAAGGCT TTGGATGAGG CAATCAATAA TGGAATAGGT
TATGACCTTG AGTTACAAAC CTATACCACT AAAGGTAGAA AAATAGATGT AAGAACGACA
TGTATTGTTA CTCAGGAAGA CGGAGTAGCT GTTCGCCTAA CGGGGATTTT TCAAGATATC
AGTGAGCAGA AAGCCAATCA GAGAAAATTA GAAAAAAGTA ATCTTGATTT AGCGAATGCG
AACTCGGCAC TAAAACTATC AGCACATTAT GACCCGTTAA CAGGATTACC TAACCGGATT
TTATTAGCCG ACAGAATTCA ACAGGCCGTG GCAAAAAGCT TGCGTAATGA CAAATATGTG
GCAGTCGCGT TTATTGATTT AGATGGATTT AAAGCAGTTA ATGACAGTCA TGGTCACACT
ATTGGTGACG AATTATTGAA AAAAGTTGCG AAACGATTAA AGCATGTGTT GCGAGAGGGG
GATACCTTAT CGCGTTTTGG TGGCGATGAA TTTGTGGCGG TCATTGATAA TCTCTCTGAC
CCTCGCGAAA GTGATTTAAT CGTGTTGCGT ATGCTTGAGT CGGTTTCTTC TACGCTGGTG
GTTGAAAAAA AATTATTAAA AATTTCTGCC AGTATTGGGG TTACATTCTA TCCGCTAGAC
AGTGCTGGCC CCGAGCAGTT GTTAAGGCAT GCGGATCAGG CTATGTATAT GGCTAAGCAG
CAAGGAAAAA ATCGCAGTTA TGTTTTTGAT ATAGAACAAG ACGTGGCCAT AAAACACCAT
AATGAAGCGT TAAAAAGAAT AGCTCAAGCG TTAAAAAATA ATGAGTTTGC ACTTTATTAT
CAACCTAAAA CCGACCTCAG AAGCAATCGA GTTGTTGGGG TCGAAGCCCT CATTCGTTGG
AATCATCCTG ACAGAGGAGT ACTTGCTCCA GCTATGTTTT TACCTGCGGT TGAGCATGAT
ATATTAGATA TCGAAATAGG AAAATGGGTC ATCAAAACGG CTTTGCAACA ATCTCAAAAC
TGGCTATCTT CGGGGACTGA TATTCCAATC AGTGTGAATA TCAGTCCCCT GCATTTACAG
CATGCAGAAT TTGTTAGTGA ATTGAAGAGG ATGCTTGATC AGTATCCTAA TATCAACGCT
GGCAGTCTTG AATTTGAAAT TTTAGAAAGC AGCGCACTGA AAGATATTGA GTTAGTTTCA
AAAGTGATGA AAGAGTGTAA CCAGCTTGGG GTGCGTTTTT CAATTGATGA TTTTGGTACA
GGTTATTCTT CATTAACCTA TTTAAAGCGT TTGCCCGCCG AAACTTTAAA AATAGATCAA
TCATTCGTGA GAGACATGTT AATAGATACG GACGATAAAG CAATTATCCA AGGAATCATT
GAATTAGCGA AAGTATTTAA TCTTAAAGTG ATTGCTGAAG GGGTCGAAAC ACCTCAGCAT
GGAGAGTTAT TACTCTCTTT GGGCTGTTAC TTTGTACAGG GGTATGGCAT TGCGAAACCG
ATGCATGAAA ACGATGTCTT AACTTGGTTA GTTAAGTGGG AAAAAACTCC CTGCTTAGTT
GATGGACGTG TTTAA
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| Protein sequence | MSNKTPQINN QQDDNNARLE LVINATGVGI WDWQVQTGEL TFNKRWAEII GYTFDELQPI
QFDSWASNLH PDDLVKAKSL LAQHFNGEID FYELEARMKH KSGHYVWVLA SGKLVERDEQ
GKPKRMIGTH LDINERKNNE ELMIVTSQLL NESQQIGRLG GWKLDLKTGD LFWTDETYRI
HETSPEEFNP TVDAGIGYFL PDSQKIISKA LDEAINNGIG YDLELQTYTT KGRKIDVRTT
CIVTQEDGVA VRLTGIFQDI SEQKANQRKL EKSNLDLANA NSALKLSAHY DPLTGLPNRI
LLADRIQQAV AKSLRNDKYV AVAFIDLDGF KAVNDSHGHT IGDELLKKVA KRLKHVLREG
DTLSRFGGDE FVAVIDNLSD PRESDLIVLR MLESVSSTLV VEKKLLKISA SIGVTFYPLD
SAGPEQLLRH ADQAMYMAKQ QGKNRSYVFD IEQDVAIKHH NEALKRIAQA LKNNEFALYY
QPKTDLRSNR VVGVEALIRW NHPDRGVLAP AMFLPAVEHD ILDIEIGKWV IKTALQQSQN
WLSSGTDIPI SVNISPLHLQ HAEFVSELKR MLDQYPNINA GSLEFEILES SALKDIELVS
KVMKECNQLG VRFSIDDFGT GYSSLTYLKR LPAETLKIDQ SFVRDMLIDT DDKAIIQGII
ELAKVFNLKV IAEGVETPQH GELLLSLGCY FVQGYGIAKP MHENDVLTWL VKWEKTPCLV
DGRV
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