| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1992 |
|---|
| Symbol | |
|---|
| ID | 4627236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 2421504 |
|---|
| End bp | 2422514 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 639797154 |
|---|
| Product | Tfp pilus assembly protein FimV-like protein |
|---|
| Protein accession | YP_943356 |
|---|
| Protein GI | 119945676 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.274788 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.303251 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGCT TGTTATTGAT TTTTACCTGT TGCTCCCCCC TAGTATTATT GCCTGATATC
AGTTTTGCAC TTGGTTCAAC CATTAGCACA GCACAAGAAA GACCGATTTA TAAAAAATAC
GGCCCAATTC ATTATTATGA GTCCCTCTGG TCAGTATCAA AAAATTTACG CCCAAATAGT
TCCGTCAGTA TTCAACAGAC ACTTCTGGCC ATTTACAAAT TGAATCCCAA TGCTTTTGTT
GCATCCGATA TAAATAATTT CATTGAAAAC TCGATAATTA ATGTGCCAAC TTACACCTTT
ATAAAAAAAC AAAGTCATCA AGATGCAATT AACTTAATTA ACAATTCTTC AAATAAGAGT
AAAACAGCAA CGAAATCAGT CGTCATTGCC AAAAGCAAAA AGGTTCTTAT TATAAAATCA
CCCTCCCTTT CTGAACAGGC GGCAGTAACG ATTGTCGATC CGGGAGATCA ATCATTAACG
GCTTCGTTAA TTGATAAAAA ACATTTGCCT GATCCAAACT CATCAGTCAG TCCAGCAACC
GAGTATGGAA ATGATCAGCA AAATAATTTA AAAGCAGATA ATGTTGAAAA TATACTTGTA
GAACAATCTA AAAGTCAATT ATTAATAAAA ACACAGACGC TAGAAGATGA ATTGAAAATT
GTTAACGAGC AATTAGTTAA TGCGACAAAA ACCAATGAGG AATTTAAATT AAGACTGCAG
CAGCTAATTA ATCAAATAGA TCTTATGAAG CGTGAAATTG AGGGTGAAAG TGCAGCTCAA
CTTACTCTTT TAAAACTGTC TAAACAGTCC AGTTCAGCCC AACAACCTGT TATTAATAAA
GCTGACGTAA ACGAGAAAAA AGGCTTTTTA AGCAATTCAT GGCTTGTTGC GGGCGCTGCA
TTATTATTAA TTATCTTTGT TTTTTTACTG ATATTTTATA AGGGTAAGAT CAGGAAGGCG
TACTTTAATC TTTACTTTTT GATGTTATTT TATTGCACCC CAGATAAATG A
|
|---|
| Protein sequence | MKRLLLIFTC CSPLVLLPDI SFALGSTIST AQERPIYKKY GPIHYYESLW SVSKNLRPNS
SVSIQQTLLA IYKLNPNAFV ASDINNFIEN SIINVPTYTF IKKQSHQDAI NLINNSSNKS
KTATKSVVIA KSKKVLIIKS PSLSEQAAVT IVDPGDQSLT ASLIDKKHLP DPNSSVSPAT
EYGNDQQNNL KADNVENILV EQSKSQLLIK TQTLEDELKI VNEQLVNATK TNEEFKLRLQ
QLINQIDLMK REIEGESAAQ LTLLKLSKQS SSAQQPVINK ADVNEKKGFL SNSWLVAGAA
LLLIIFVFLL IFYKGKIRKA YFNLYFLMLF YCTPDK
|
|---|
| |