| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1972 |
|---|
| Symbol | |
|---|
| ID | 4627049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 2399488 |
|---|
| End bp | 2400537 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 639797137 |
|---|
| Product | putative periplasmic protease |
|---|
| Protein accession | YP_943339 |
|---|
| Protein GI | 229358029 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.114164 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.766223 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGAATATG TTATCGAATA TGGTTTGTTT TTCGCAAAAA TAGTGACTTT CGCTATTGCT
ATTATTGCAG TTGTTGCTGC TGTTATTGCC CTGGTAAGTA AACAAAAAAA CAAGAAAGGG
GAATTACAAC TGATTGACTT GTCAGAGCAC CTGAAAGAAA CAAAGAAAAC AATTGAAGAA
AAATTACTCA CCCATCACCA GTTAAAAGCG CGTCATAAAG AAGAGAAAAA AAATCAAAAA
GAGACAGACA AAGCCGCAAA AAAAGCAGCA AAATCAGGTC TGGATGAAAA AGGATTAGCA
CAACTTTATG TAATCGATTT TAAAGGCAGT ATTGATGCTA AAGAAGTGAC CTCTCTGCGC
GAGGAAATCA CTGCTATTTT AGGGGTGGCA ACAGAGCAGG ATGAAGTCTT TGTCCGTTTA
GAAAGTGGTG GTGGTATGGT GCATGGTTAC GGTCTTGCTG CTTCGCAACT GCAACGTTTA
AGAGATCATA AGATTCCATT AACAATATCG GTTGATAAAG TCGCTGCCAG TGGTGGTTAT
ATGATGGCCT GTGTTGCGAA TAAAATCATC GCTGCCCCTT TTGCAATTTT AGGGTCAATT
GGTGTTATTG CCCAGATCCC AAACTTTAAT AAAGTATTAA AAAAGCACGA CATAGAATTT
GAGCAATTAA CGGCAGGTGA ATACAAACGC ACATTAACCA TGTTCGGGGA AAATGATCAG
GCAGGGCGTG ATAAGTTTAA GCAGGAATTA GAGGAAACAC ATGATCTATT TAAACAATTT
GTTAGCCAAC AGCGCAGTCA AATTGATATT GATAAAGTGG CAACTGGTGA ACATTGGTAT
GGGCTGCAGG CGATAGAACG CAATTTAGTT GATCAGATAT CTACCAGTGA TGACTATTTG
TTAACTCAGC TGGACAGCCG TCACATCATT CAAATTAAGT ACACTCAGCG TAAGAAATTT
GCGGATAAAC TTGGACACGC TGCTGTTATT GCTTTAGAAA ATAGTCTGTT AAAAATATTT
CAAACGCAGT CTAATAAATT ATTTAAGTAA
|
|---|
| Protein sequence | MEYVIEYGLF FAKIVTFAIA IIAVVAAVIA LVSKQKNKKG ELQLIDLSEH LKETKKTIEE
KLLTHHQLKA RHKEEKKNQK ETDKAAKKAA KSGLDEKGLA QLYVIDFKGS IDAKEVTSLR
EEITAILGVA TEQDEVFVRL ESGGGMVHGY GLAASQLQRL RDHKIPLTIS VDKVAASGGY
MMACVANKII AAPFAILGSI GVIAQIPNFN KVLKKHDIEF EQLTAGEYKR TLTMFGENDQ
AGRDKFKQEL EETHDLFKQF VSQQRSQIDI DKVATGEHWY GLQAIERNLV DQISTSDDYL
LTQLDSRHII QIKYTQRKKF ADKLGHAAVI ALENSLLKIF QTQSNKLFK
|
|---|
| |