Gene Ping_1956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_1956 
Symbol 
ID4626997 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp2379433 
End bp2380686 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content45% 
IMG OID639797122 
Productsugar ABC transporter extracellular solute-binding family 1 protein 
Protein accessionYP_943324 
Protein GI119945644 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.318288 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.222736 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATTT CAAAACTATT TTTAAGTATT TCATTAGCAT TGGGCCTAAC AGCCGGTGCT 
CAAGCAGCTG AAATCGAAGT ACTGCACTAT TGGACTTCAG GGGGTGAAGC TAAATCTGTT
GCCGAACTGA AAAAAATGTT AGAAGCAAAA GGACATGACT GGAAAGACTT CGCAGTGGCA
GGTGGTGGTG GTGAAAGTGC CATGACAGTA CTAAAAACAC GTGTCGTTTC AGGTAACCCA
CCAGCAGCCG CACAAATCAA AGGGCCAAGT ATTCAGGAAT GGGGTGACGA AGGCGTATTA
GCTAACCTTA GCGCTGTCGC TCAGGCCGAA GGCTGGGATG ACTTGCTACC CGGTGTTGTG
GCAGATGTTA TGAAGTATGA CGGTAAATAT GTAGCCGTTC CCGTTAACGT ACACCGTGTA
AACTGGATGT GGGTAAACCC TGAAGTCTTT AAAAAAGCCG GTGCAAACGT ACCAACAACC
TGGAAGGAAT TCTTTGTTGC TGCTGATAAA ATTAAAGCCG CGGGCATGAC GGCTGTTGCC
CATGGTGGAC AACCTTGGCA AGATGCAACC ATGTTTGAAT CTGTTGTGCT AGGTGTTGCG
GGTGCTGAGT TTTATAAGCA GGCATTTGTT GAATTAGACC CTGAAGCTTT AAACAGCCCA
ACCATGATTG ATGCACTGAA GACGTTCCAT AAAATCAAGA ACTATACCGA TGCAGGATCG
CCAGGACGTG ACTGGAATCT GGCCACAGCC ATGGTTATCA ATGGTGAAGC CGGTATGCAG
TTTATGGGAG ACTGGGCAAA AGGTGAATTT ACTGCCGCCG GTAAAGTACC GGGTAAAGAC
TATATCTGTA CTGCTGCACC GGGTACATCT GGCGATTTCA CCTTTAACAT CGACAGTTTT
GTGATGTTTA ATCTGGAAGA CAAAGAACAG CGTAAAGGTC AAAATGATCT GGCCAGCACT
ATCCTAAGCG TTCCTTTTCA GGAAGTCTTT AACCTTAATA AAGGATCAAT TCCTGCGCGT
TTGAATATGT CCATGGATAA GTTTGATGAT TGTGCAAAAC TGTCGGCAAA AGATTTTGTC
AAAACAGCTA AAGCAAATAC GTTAGTGCCA AGTATGGCGC ACGGTATGTC AACCTTCTCT
TCAACCCAAG GTGCTATCTA CGACACTGTT ACTGAGTTCT ACAACTCAGA TTCAATTAGC
GCAGAAGAAG CAGCAGAAAA ACTAGTAAAA GCAGTCGCAG CAGCTAAATA CTAA
 
Protein sequence
MKISKLFLSI SLALGLTAGA QAAEIEVLHY WTSGGEAKSV AELKKMLEAK GHDWKDFAVA 
GGGGESAMTV LKTRVVSGNP PAAAQIKGPS IQEWGDEGVL ANLSAVAQAE GWDDLLPGVV
ADVMKYDGKY VAVPVNVHRV NWMWVNPEVF KKAGANVPTT WKEFFVAADK IKAAGMTAVA
HGGQPWQDAT MFESVVLGVA GAEFYKQAFV ELDPEALNSP TMIDALKTFH KIKNYTDAGS
PGRDWNLATA MVINGEAGMQ FMGDWAKGEF TAAGKVPGKD YICTAAPGTS GDFTFNIDSF
VMFNLEDKEQ RKGQNDLAST ILSVPFQEVF NLNKGSIPAR LNMSMDKFDD CAKLSAKDFV
KTAKANTLVP SMAHGMSTFS STQGAIYDTV TEFYNSDSIS AEEAAEKLVK AVAAAKY