| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1839 |
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| Symbol | |
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| ID | 4626134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | - |
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| Start bp | 2230976 |
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| End bp | 2233267 |
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| Gene Length | 2292 bp |
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| Protein Length | 763 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 639797013 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_943215 |
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| Protein GI | 119945535 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.338108 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACAC CTGCAAAGTC AACCAAGCTA TCCAGCAAAA CGTTACGCCA GCGCGCGGAA
GCACAACTGA AAACACAAAC AGAAATCAAA CAAACTATTC CTAGCGACTA TGCAGCCAAA
AAGATGATAC ACGAATTGCA GGTTCATCAG ATTGAGCTGG AAATGCAGAA TGAGGAGTTA
AAGCAAGCAC GGATAACCGA AAAATTATAT TATCGCTATA CCGAGTTATT TGAATTTGCA
CCTATTGCCT ATTTTTCTTT CAATCTGAAG GGCGTTGTCA ATCAGGTTAA TTTACGCGGG
GCGAGCCTAT TGGATATTGA ACGCGCTAAC TTGGTAGGAA AACAGTTTTC AAACTACTTA
ACACCCCAAG ATCGTGATAA ATTCAACCGT TGTCTGGCAA AAGCATTTGC GGGTGATGGC
ATACAATCCT TTGAGGTCTT AGCACAGATT GGCAAGCATA AGCGTTGGCT GAATATTGAA
GCCAATCTCG GCATTACCGA AACAGACTGT CTTGCCGCGG TAATTGACAT CACCGACCGT
AAACGCGCCG ATGAAAAACT CAAACTTGCC GCCAATATAT TCACTCATAC GCTGGAATGC
ATTATTATCA GCGATGAAAA TGGCTATATT GTTGAGGCTA ATAAGGCCAG TTGCGATACG
ACCGGTTATT CAAAAGAGGA GCTGCTGCAA TCACATGTCA GCATACTTGA AAGCAGTCAA
TATGAGAAGA TAGAGACTGC ATTACAAAAA GATAAAAGCT GGCAGGGAGA TATGTCATAT
CGCACAAAAA ATGGCGAACA TCATTATTGC TGGTCAGAAA TGTATGTTAT TGAGCTCGAA
GAAAAAGGGA CACTCTGCCG TATCAGTTCC TTTATCGATT TAAAGCAAAG TACAAGAGTT
GAGCCCAAAA TACAGTTTTT ATCAAAACAT GATCCGCTGA CCGGGGTATT TAACCGTATT
GCGCTGTTTA ACCGATTGGA ACAAGTAATA GCCCGGGCAA GCTTTAATCA GCGGATGATG
GCGGTGCTGT TAGTGGATAT TAATGGCTTT AAGGCAATTA ATAAACAGCA TGGGCATAAT
GCGGGAGACA TGGCTCTACA ACAGATTGCA GAACGTCTTA AAAGCTGTGT TTCTGAAAAA
GATACGGTTG CGCGTTTTGG TGGTGATGAG TTTGTTATTA TTATTGATGA GTTGCTTAAT
GAACAGGATG TGGCTGATGT CGCGCAAAAT ATAACCGCGC AATTTGAGCG ATACTTTGAC
ATTGACCATT CATCTGCGCA TCTCTCTGCG ACAATCGGGA TTGCCCTCTA TCCTGACGAT
GGCACTGATA TAGACACGCT ATTAGGCAAC GCGGAAAAAG CGATGCAGCG TGGTAAATCC
CATATTAACA CCACAAAAGA AAGTGATTCT GTTACCGCTA CAGCACCCTC TTTAAAAAGC
GGCAAGCTGT CAGCTCAGAC CACGACCTAT TATTTTTATA CTAAAAAGTT GACCCAATAT
TCACGGCAGC AGGTTAAATT TAAAGAAGCA TTAACACAAG CAGTGGCGCA GGATCAGTTT
GAGCTGTACT ACCTGCCTCA GTACGATCTG AGTAAACGGC AAATTGTCGC GCTGGAAGCG
CTGTTATGCT GGAATCACCC GCAGCGTGGC GTGCTACATT CGGACAGCTT TATAAGCCTG
GCTGAACATT ACGGTTTAGC GGTGCAGATA GGTCTTATTA TGATCCGTAA AGCCGCACTG
CAGGCGGTAA TCTGGCAGAA AGCGGCAATT AATTTCGGAC GTATTGCCAT TAATTTAACG
GAAGTGCAAT TATCACAATT TAGTTTGATT GGAGATCTAC AGACTATTCT GCTGGAAACG
AAGTGTTCAA TAGAATGGCT GGAGTTTGAA ATCGATGAAG TGACTTTTAA AAGTGATAAC
CCAACCGTTT ATGAAAATAT TCTCAATATC AGTAAGATGG GCATGGCACT GACCGTTGAT
AAATTTGGTG CAGATCGTCC ACTGTTTAGG CTGTTTGAAC AGTTAACAAT CGATAAATTT
AAAATAGCAC CCCATTTTAC CGATGGGTCT GTCAACTTTG TTAACCGTGC GCTACAGGAT
GGGTTTCTTT TTCTGTCCCG CTCATTAGGT GTGACGGTCG TTGCTGACTC ACTCGCTAAT
AACACCGACG GTGAGCCCGC AATACCGAAT AAAATCTCGA ATGAAGTTGA GCCGGCCAGT
CAGCAGTTGC ACAGTAAAGC GATGAAGGCC TCTGAAATCA CTTTTCATCT GCGCTGTCAT
AAACGTAAAT AA
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| Protein sequence | MKTPAKSTKL SSKTLRQRAE AQLKTQTEIK QTIPSDYAAK KMIHELQVHQ IELEMQNEEL
KQARITEKLY YRYTELFEFA PIAYFSFNLK GVVNQVNLRG ASLLDIERAN LVGKQFSNYL
TPQDRDKFNR CLAKAFAGDG IQSFEVLAQI GKHKRWLNIE ANLGITETDC LAAVIDITDR
KRADEKLKLA ANIFTHTLEC IIISDENGYI VEANKASCDT TGYSKEELLQ SHVSILESSQ
YEKIETALQK DKSWQGDMSY RTKNGEHHYC WSEMYVIELE EKGTLCRISS FIDLKQSTRV
EPKIQFLSKH DPLTGVFNRI ALFNRLEQVI ARASFNQRMM AVLLVDINGF KAINKQHGHN
AGDMALQQIA ERLKSCVSEK DTVARFGGDE FVIIIDELLN EQDVADVAQN ITAQFERYFD
IDHSSAHLSA TIGIALYPDD GTDIDTLLGN AEKAMQRGKS HINTTKESDS VTATAPSLKS
GKLSAQTTTY YFYTKKLTQY SRQQVKFKEA LTQAVAQDQF ELYYLPQYDL SKRQIVALEA
LLCWNHPQRG VLHSDSFISL AEHYGLAVQI GLIMIRKAAL QAVIWQKAAI NFGRIAINLT
EVQLSQFSLI GDLQTILLET KCSIEWLEFE IDEVTFKSDN PTVYENILNI SKMGMALTVD
KFGADRPLFR LFEQLTIDKF KIAPHFTDGS VNFVNRALQD GFLFLSRSLG VTVVADSLAN
NTDGEPAIPN KISNEVEPAS QQLHSKAMKA SEITFHLRCH KRK
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