| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1796 |
|---|
| Symbol | |
|---|
| ID | 4626078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 2181466 |
|---|
| End bp | 2182653 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 639796972 |
|---|
| Product | bicyclomycin/multidrug efflux system |
|---|
| Protein accession | YP_943174 |
|---|
| Protein GI | 119945494 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.174211 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0404664 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCGT CCTCCACAAC AAAATTAAGT TTTTTACTGA TCGTTATTCT GGGTGGTATC
ACCTCCCTTA CTCCTTTTGC TATTGATATG TACCTGCCAG CAATGCCGAG TATTGCAAAA
GAGTTTGGGG TAAGTGCAGG TGCCATTCAA ATTACCTTGA CCTCTTTTAT TGCCGGATTT
GCAGTTGGCC AGCTATTTCA TGGTCCTTTA TCAGATAGTT TTGGTCGTAA GCCTGTGTTG
CTGCTTGGTA CCTTTTTCTT CGCGCTTGCC GCTGTTATTA GTGCAGCGAG CGACAGTATT
GACGCGCTTA TGTGGGCACG TGCTGCGCAA GGTTTTTCAG GTGCTGCTGG TGCTGTTGTT
GTTCAAGCTA TTGTTAGAGA TATGTTTGCC AAGGAAGATT TTGCTCGCAC TATGTCATTT
ATTATATTAG TGATGACTAT TGCTCCCTTA TTAGCGCCAC TTGCTGGTGG TTATCTGGCC
GTCTGGTTTG GTTGGCGCTC TATCTTTTGG TTATTAGCCC TGATTGCATT TGTTATGATT
ATCGCTGCCA GCTTAGTTAT TCCTGAAACC TTAAAAGCTG AAAATAGACA ACCTTTTCGC
CTGCGCACTA CAATGCGCCA TTTTTTTACC CTCTTTACCC GATCCAAAGC CTTTGGATTG
ATTTTTACCG GGGCTTTTTC ATTTGCTGGT ATGTTTGCAT TTTTAACGGC TGGCTCTTTC
ATATACATAG AAATATATGG TGTGAGCATC ACTAATGTTG GTTATTTATT TGGCTTAAAT
ATACTTTTAA TGATGGTGAT GACGACATTA AACGGAAAAT ATGTAAAAAG ATTAGGATCG
CATTATCTGC TTCGTTTGGG GTTAACTATT CAACTAATCG CAAGCCTGCT CTTAGTGTTA
GCGCAGTTAT TAGATTTAGG TTTATGGGGA GTTGTTGTAC CTGTTATGTT ATTTTTCAGC
ACTATTTCAA TGGTGGGCAG TAATAGTATC GCGTTATTAT TAAACGAATA TCCGGAAATA
GCGGGTACGG TATCTTCGTT GGCGGGCTCC CTCAAATTTG GTGCGGGTGC CTTGGTCGCT
GCTGCTGTCT CTATGTTACC TAGTGGCAGT GTTTGGCCGA TGATATTAAT GATGGTGTTA
TGCAGTTTGC TGTCAATGAC ATTTTATACT TACTGTGCAA AGAGGTAA
|
|---|
| Protein sequence | MDSSSTTKLS FLLIVILGGI TSLTPFAIDM YLPAMPSIAK EFGVSAGAIQ ITLTSFIAGF
AVGQLFHGPL SDSFGRKPVL LLGTFFFALA AVISAASDSI DALMWARAAQ GFSGAAGAVV
VQAIVRDMFA KEDFARTMSF IILVMTIAPL LAPLAGGYLA VWFGWRSIFW LLALIAFVMI
IAASLVIPET LKAENRQPFR LRTTMRHFFT LFTRSKAFGL IFTGAFSFAG MFAFLTAGSF
IYIEIYGVSI TNVGYLFGLN ILLMMVMTTL NGKYVKRLGS HYLLRLGLTI QLIASLLLVL
AQLLDLGLWG VVVPVMLFFS TISMVGSNSI ALLLNEYPEI AGTVSSLAGS LKFGAGALVA
AAVSMLPSGS VWPMILMMVL CSLLSMTFYT YCAKR
|
|---|
| |