Gene Ping_1589 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_1589 
Symbol 
ID4625386 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp1943988 
End bp1945001 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content39% 
IMG OID639796776 
ProductCRISPR-associated Cse4 family protein 
Protein accessionYP_942986 
Protein GI119945306 
COG category 
COG ID 
TIGRFAM ID[TIGR01869] CRISPR system CASCADE complex protein CasC/Cse4 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.466428 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.48477 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAACGT TTATTAATAT TCATACCCTT ATTTCTCATC CATCATCGAT GATGAATCGT 
GATGATTCAG GCATGCAAAA AACCGCTGTT TTTGGTGGTA GTGTACGCAG TCGTATTTCC
AGCCAATGTT TAAAGCGTGC TATTCGCCAA AGCGATATTT ATGGAGAAGC AGTTGCTGAA
AAGTCTATTC GTACCAATAA GTTTGATGAA TTGTTAGATC TATGCAAAGA AGCAATGCCT
GAAACTGATA TTAAACTAAT TGAAGATGTG TTGTTAAACA TGGGTTCGAA AGTAACTAAA
GATAAGAAAA CTGAGATACG CAATTTCGAT GCTGTTCAAC CTTATGCAAT AGGCTCAATA
CGTGAAGCCA TTAATATGGT GAATGAAGGA ACTGAATTAA AAGATCTTAA AAAAATTGTG
CAAATCCCAA CCATTGATGT GGCGTTGTCA GGTCGGATGG ATGCTAGCTG CCCACCGCGA
AATGTTGAAG CGGCAATGAG TGTGGCACAC AGCTTAACCA CGCACAGCGC GGATATTGAA
GTAGATTGGT TTACCGCCTG TGATGATTTA GCAGAGCAAG GCTCCGGACA TATAGGGACA
ACGGAATTCA GCTCGGGCGT ATTTTATCGT TATGCGTCAA TCAATGTTGA TTTATTGGCA
AAAAATGTTA AATCCACTGT GAGTGAAGTA ACACCCATTA TTAATACTAT GATCCGCTGT
TTTGCTCAGG TATCACCTAG CGCCAAGCAA AAAGTATTTG CAGCCTACAA TCAAGCTGAT
TTTGTGATGG CCACACATTC CAACCAGCCG ATTTCCCTTG CCAATGCATT TAGAAAACCG
ATTGAAAATA ATGGTGATGT GATGGAAAAC TCGATCGCTG CGTTAGTGAA ACATTATGAA
AAGCTCACCA ATGCTTATGA GCTTGACTCA AAAGCGATAG CACTCGATTT AACCGATAGT
GCGCAAAGTA AACAAATCAA TTTGGTTAAC AAAATCAGTG ATATTCGTTT TTAA
 
Protein sequence
MTTFINIHTL ISHPSSMMNR DDSGMQKTAV FGGSVRSRIS SQCLKRAIRQ SDIYGEAVAE 
KSIRTNKFDE LLDLCKEAMP ETDIKLIEDV LLNMGSKVTK DKKTEIRNFD AVQPYAIGSI
REAINMVNEG TELKDLKKIV QIPTIDVALS GRMDASCPPR NVEAAMSVAH SLTTHSADIE
VDWFTACDDL AEQGSGHIGT TEFSSGVFYR YASINVDLLA KNVKSTVSEV TPIINTMIRC
FAQVSPSAKQ KVFAAYNQAD FVMATHSNQP ISLANAFRKP IENNGDVMEN SIAALVKHYE
KLTNAYELDS KAIALDLTDS AQSKQINLVN KISDIRF