| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1572 |
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| Symbol | prpD |
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| ID | 4625424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 1920976 |
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| End bp | 1922421 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 639796760 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_942970 |
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| Protein GI | 119945290 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.342813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.548797 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTACTA ATGTTGAATC AAATATTAAA CCGGACTATG ACCAACCCAT CAAAGATATA
ACCAATTATG TGACCGATTA TGCGATAAAA AATGACCATT TGTATGATAC CGCCCGTTTT
TGTTTAATGG ATACTCTGGG CTGTGGTCTT TTAGCACTTA GATACCCGGA ATGCAGCAAA
CATTTAGGAC CCATAGTTCG TGGAACCATA GTGCCCAACG GTGCGCGAGT CCCGGGTACT
CAATTTGAAA TGGACCCCAT TAAAGCTGCG TTTGATATTG GTTGTATTAT CCGGTGGCTA
GATTTTAATG ATACCTGGTT AGCCGCTGAG TGGGGCCACC CCTCGGATAA CATGGGCGGA
ATTTTAGCGG TTGCTGATTA TGTTTCACGT CAAAGCCTGG CCAGCGGTTA TGAACCACTG
ACTATGAAAG ATGTGCTCAC GGCCATGGTC AAAGCACATG AGATCCAGGG AGTGCTAGCG
TTAGAGAATA GTTTTAACCG GGTAGGGCTG GACCATGTGA TTTTAGTCAA GATAGCGACC
ACAGCGGTGG TGACTCAAAT GTTGGGCGGG GGATCTGAAG AAATAATGGA TGCACTTTCC
CAGGCACTGG TCGATGGGCA AAGTTTGCGA ACTTATCGGC ACTCGCCAAA TGCCGGTTCA
CGTAAATCCT GGGCAGCTGG TGATGCGACC AGTCGGGCAG TGCGTTTAGC GATGATCACT
TTGTCGGGCG AAATGGGTTA TCCGGGCGTA TTAAGCGCCA AAAACTGGGG GTTTTATGAC
GTGTTGTTTG GCGGTAAAGA ATTTAAATTG CAGCAACCTT ATGGTGAATA TGTCATGGAT
AATGTGTTAT TTAAAATTTC TTATCCCGCA GAATTCCATG CTCAGACTGC GGTTGAATGT
GCGGCTAACT TGCACCACAA GGTGGTCAAT TGTTTAACTG AAATAGATCG CGTTGAATTA
ACAACACACC AATCAGCCAT TCGAATTATC AGCAAACAAG GTGCGCTGCA TAATCCGGCC
GATCGCGATC ACTGTTTGCA ATACATGGTC GCCATAGGAT TAATTTTTGG TGATTTAAAT
GCGGACCACT ATGAAGATGA AGTAGCAGCT GATGGTCGTA TTGATACGTT AAGATCAAAA
ATGCATGTCA TTGAAGATAA GTCTTACAGT GAGGATTATC TCGACCCTGA AAAACGCAGC
ATAGCTAACG CAATTCAAAT TTTCTTTAAA GATGGCAGCA GCACAGAAAA AGTGGTAATG
GAATATCCGA TTGGTCATAA ACTTCGCAGA GAAGAAGGGA TCCCGTTGCT ACAAGCCAAA
TTTGAACGTA ATGTTAAAAC ACGATTCCCT GATAAACATG CAAGGACAAT AGTGGAAATC
TGCAGTGACA AGCAAGAGTT CGAAGCAATG CCGGTAAATG AATTTATGGA TTTGCTGGTT
ATTTGA
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| Protein sequence | MSTNVESNIK PDYDQPIKDI TNYVTDYAIK NDHLYDTARF CLMDTLGCGL LALRYPECSK
HLGPIVRGTI VPNGARVPGT QFEMDPIKAA FDIGCIIRWL DFNDTWLAAE WGHPSDNMGG
ILAVADYVSR QSLASGYEPL TMKDVLTAMV KAHEIQGVLA LENSFNRVGL DHVILVKIAT
TAVVTQMLGG GSEEIMDALS QALVDGQSLR TYRHSPNAGS RKSWAAGDAT SRAVRLAMIT
LSGEMGYPGV LSAKNWGFYD VLFGGKEFKL QQPYGEYVMD NVLFKISYPA EFHAQTAVEC
AANLHHKVVN CLTEIDRVEL TTHQSAIRII SKQGALHNPA DRDHCLQYMV AIGLIFGDLN
ADHYEDEVAA DGRIDTLRSK MHVIEDKSYS EDYLDPEKRS IANAIQIFFK DGSSTEKVVM
EYPIGHKLRR EEGIPLLQAK FERNVKTRFP DKHARTIVEI CSDKQEFEAM PVNEFMDLLV
I
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