| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1562 |
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| Symbol | |
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| ID | 4626427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 1910942 |
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| End bp | 1912774 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 639796755 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_942965 |
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| Protein GI | 119945285 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.66295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.802083 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGTA ATAATCTGAA AAGCAGTCTA GCAGAACTAG TCAACACTGA ATTTTCCCTT
CAAAATGAAG AAAATAATAA ATGGGCAGTA GAGCTGGCCA TTGCTAACAG GAAGCTTGCT
TTTCAAAATG AAGAGAAGGA TAAACGAGCA GCAGAGCTGG ATATAGCCAA CAAGGAGCTT
GCTTTTCAAA ACGAAGAGAA GGATAAACGG GCAGCAGAGC TGGTCATTGC TAACAGGAAG
CTTGCTTTTC AAAATGAAGA GAAGGATAAA CGAGCAGCAG AGCTGGATAT TGCCAACAAG
GAGAAGGATA AACGGGCAGC AGAGCTTGCC ATTGCGAACA AGGAGCTTGC CTTTCAAAAC
GAAGAGAAGG ATAAACGGGC AGCGGAGCTT GCCATTGCCA ACAAGGAGCT TGCCTTTCAA
AACGAAGAAA AAAGTAAACG TGCAGCAGAG CTTGCCATTG CCAACAAGGA GCTTGCCTTT
CAAAACGAAG AAAAAAGTAA ACGGGCAGAA GAGCTCAATG ACCTCGCCTT CTATGATGCG
CTTACCGGCT TGCCCAATAG ACGTATTTTG ATAGACCGGC TGCATCACGC ATTATCGTCC
AACGTGCGTC AAGGCTTTGA GAGTGCGGTG ATGTTTATTG ATTTGGATCA TTTCAAGGAT
ATCAACGACA CCCTCGGCCA TGAAGTGGGT GATTTACTGC TGATACAGAT AGCGCAACGC
CTGGAGTCCT GTCTACGCAA ATGCGATACC GTGGCGCGTC TGGGTGGGGA CGAGTTTGTG
TTGATTCTGG AAAACCTGGA CCAAAAAACC ATTGAAGCCG CAGCCAAGGC GAATTTCATT
GCTGATAAAA TTTTTGCTGC GCTCAACAAA CCTTACCAGC TCGATATGCA CGAATGCTAC
AGCACTGTGA GTATCGGTTT GGCCTTTTTC GGCCACGAGG GTAAGACAGC AGAAGGTCTG
CTGAAACAAG CCGACATCGC CATGTATCAG GCCAAAAAAG CCGGCGGCAA TACAATGAGG
TTCTTTAACC AGAAAATGCA GGACATCATT AACGTACGGA CAAGCCTCGA ACATGAATTG
CGTATTGCAG TTGCAAAGTC GCAATTTAAT TTGTATTACC AAATTCAAAT GGATAGTTCC
AACCGAGTAT GGGGGGCCGA AGCATTGATC CGTTGGGTGC ACCCTGAACG CGGGCTGGTG
TCACCTGCCA CCTTTATCCC TCTGGCGGAA GAAACCGGAT TAATTCTGCC TATTGGGCAA
TGGGTTATAG AGACGGCTTG TGCGCAGATC AAAATATGGC AGAAAGAGTC GCTGACCCGC
GACTTGACAC TGTCAGTAAA CGTGAGTGCA AAACAATTCC GGCAGACGGA TTTCGTGGAT
CAAGTGCAGT CAGCTGTGCG CCGACATGCT ATTTCCGCAA ATTTACTCAA GCTGGAATTG
ACCGAAAGTT TGTTCCAAGA GGACATCAAA GTCACCATTG CCACCATGAA CGCATTAAAT
AATATTGGCA TTCAGTTCTC TCTAGACGAC TTCGGCACTG GCTATTCGTC CTTACAGTAC
CTCAAGCAGC TACCGCTCGA CCAGATCAAG ATAGACCAGT CGTTCGTGCG CGATATTGCG
ATAGATAGTA ATGACAGAGC GATAGTAAAG GCAATCATTG CTATGGCACA CATTCTGAAG
ATAGACGTCA TTGCCGAGGG AGTGGAAACG GAAGAGCAAC GACAATTACT CTTAGGCAAA
GGATGCTCAT TCTTCCAAGG GTATTTATTT AGCAAACCGA TACCTATTGA GCAGTTTGAA
GCGTTAATCC GTAGTGGTTC AGAGTTTAAT TGA
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| Protein sequence | MNRNNLKSSL AELVNTEFSL QNEENNKWAV ELAIANRKLA FQNEEKDKRA AELDIANKEL
AFQNEEKDKR AAELVIANRK LAFQNEEKDK RAAELDIANK EKDKRAAELA IANKELAFQN
EEKDKRAAEL AIANKELAFQ NEEKSKRAAE LAIANKELAF QNEEKSKRAE ELNDLAFYDA
LTGLPNRRIL IDRLHHALSS NVRQGFESAV MFIDLDHFKD INDTLGHEVG DLLLIQIAQR
LESCLRKCDT VARLGGDEFV LILENLDQKT IEAAAKANFI ADKIFAALNK PYQLDMHECY
STVSIGLAFF GHEGKTAEGL LKQADIAMYQ AKKAGGNTMR FFNQKMQDII NVRTSLEHEL
RIAVAKSQFN LYYQIQMDSS NRVWGAEALI RWVHPERGLV SPATFIPLAE ETGLILPIGQ
WVIETACAQI KIWQKESLTR DLTLSVNVSA KQFRQTDFVD QVQSAVRRHA ISANLLKLEL
TESLFQEDIK VTIATMNALN NIGIQFSLDD FGTGYSSLQY LKQLPLDQIK IDQSFVRDIA
IDSNDRAIVK AIIAMAHILK IDVIAEGVET EEQRQLLLGK GCSFFQGYLF SKPIPIEQFE
ALIRSGSEFN
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