Gene Ping_1543 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_1543 
Symbol 
ID4626209 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp1888116 
End bp1891946 
Gene Length3831 bp 
Protein Length1276 aa 
Translation table11 
GC content41% 
IMG OID639796740 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_942950 
Protein GI119945270 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.386484 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.38403 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTTTTA ATAATTCAAA CATCACAGCG TCCCCTATTC GTCAAAAAAT TCGCGAGTTC 
TATCGTATTG ATGAAAGTAT TGCGGTAGAG CATATTTTAC CCTTGGCAGA AGTTAACGAT
AATGCAGCAA GCAGAGCGTG GGAAAAAGCC CGTAAAATGT CTATGAAAAT ACGTAAAGAT
GAATCGGGAA ACGGTGCGGT AGATGCCTTA CTGGCAGAAT ACACATTATC AAGTGAAGAA
GGTGTGGTGT TGATGTGTTT AGCCGAAGCC TTATTACGTG TGCCAGATAA GCATACCCAA
GATGCCCTCA TTAGTGACAA AATATCTAAA GGGCAGTGGG ACAGTCATCT AGGCAGCAGT
GATTCACTGT TCGTTAATGC CTCATCTTGG GGGTTATTAG TGACCGGAAA GATGGTTGAC
TATGCTGATG AACGCGAAAA AGATAGCTTT GATTTATTGA AGAAGGTTAT TGGTCGATTA
GGTGAGCCTG TCATTCGCAA GTCAATGAAC TACGCCATGC AAATTATGGG TGAGCAGTTT
GTTATGGGCG AAACTATTCA AGATGCTACT GATCATGCTG CCAAGAAAGC GCGGCAAGGC
TTCGTCTATT CTTACGACAT GCTAGGTGAA GGTGCGCGAA CCATGAGTGA CGCTGAAAAG
TATTTTAAAG CTTATCAAGT TGCTATAGAT GCTATTGGCG CAGTTGCTCG TGCGTCGGGT
AAGAACGACC CTCGCAAAGT GCCTGGTATT TCAGTTAAGC TTACTGCGAT TCATCCTCGT
TACGAATTTG CACAAAAAGA ACGGGTAATG GCTGAAGTTG CTCCCAAACT TAAAGCACTT
TGTTTGCAAG CCAAAAGCTA CAATATTGGT TTAACTGTTG ATGCGGAAGA GTCTGAGCGA
TTAGATATCT CCCTTGATGT TATTGAGGCG GTATTTAGTG ATGATGAGTT AGCAGGTTGG
AATGGCTTTT CGATGGCCCT GCAAGCTTAT CAAAAACGCG CTATTTTTAT AGTTGACTGG
TTACGTGAAC TAACCATCCG TGTTGACCGA AAAATGATGG TGCGCTTGGT AAAAGGTGCT
TATTGGGATA CTCAGATTAA AAACAGCCAA AAAGGGGGTT ATCAGCATTT TCCGCTATTC
ACTCGCAAGG CTTCGACTGA TGTATCTTAC ATCGCCTGTG CGAAAAAATT ATTAGAATAT
AGAGATACCA TCTTTCCACA GTTTGCTACG CATAATGCTT ACACTGTCGC GACTATTCTT
GAGCTGGCGG GCAATGACAA AACAAGTTTT GAATTCCAAT GTCTATATGG CATGGGTGGC
TCGTTATATG ATCAAGTTGT TACAAATGAA AATGTTCAAT GTCGCATCTA CGCACCGGTT
GGTCCTCATG AAGATCTACT CGCCTATTTA GTTCGTCGTT TGTTAGAAAA TGGCGCTAAC
TCTTCTTTTG TTAACGCCAT TATTGATGAC TCACAACCGA TCGAATCTTT GCTTCGCAAT
CCCGTTGAAA AAATGCATAG CTTAAAAGAC AAATATAACG GCCAGATAAT CAAACCCATC
GCGTTATACC ATGATCAAAA AGGTGTCGGT CGAGATAATT CCAAGGGCCT AGATTTAACA
GATATCAATA CAGTAACCCC TTTAAAAACA TCACTGGATA ACTGGCTTGT GAATAACTTG
TTCTCTGAAG ATGATGTGCC AGAAGGTTCT ATCGCTATTA GAAACCCAGC AAAGCAGAGT
GAAATTATTG GTTTTCAACG ACATCACAGC AAGGATGAAA TGCTCGCGAT GGTCGAAACA
GCTCACAATG CATTTGCTTC ATGGTCACAA ACGTCTGTAT CTGAACGTGC GGACTTATTA
TGCCGTGTTG CCGATGTTCT TGAACATCAT ATGGATGAGT TTATTGCCTT ATGCATTAAG
GAAGCAGGGA AAACGACACA AGATGGTATT GATGAAGTCA AAGAGGCAGT TGATTTTTGT
CGCTATTATG CACAACAAGC GATTGAACTT GCAGAAGATG ATCGTATAGA AGCCCGTGGT
GTGGTGTTAT GTATCAGCCC CTGGAACTTC CCGTTAGCTA TATTTGTAGG GCAAGTGACT
GCTGCCATTG CTACTGGTAA TACAGTGTTA GCTAAACCAG CCCAGCAAAC AAGTTTAATT
GCATTGCGCG CTATTGAACT AATGACATCG GTTGGATTAC CCCATGGCGT TGTACAAGCC
GTTATTGCAA AGGGTAGTGA TGTGGGTAAA GTTATTATTC CTAATGCACG TATTCAAGCG
GTTATTTTTA CTGGTTCTAT TAAAACAGCG ACTATAATTT CGCAAACATT GGCTGATAGA
GGTGGCGATC AAGTGCCGTT TATTGCTGAG ACGGGTGGTC AAAACTGTAT GTTAGTTGAC
TCTACCGCCC TACCTGAACA AGTCGTTGAT GATGTTATTT CTTCAGGATT TCAATCTGCA
GGTCAACGTT GTTCTGCACT TCGAGTGTTA TTTTTACAAG AAGATATTGC TGATAATGTT
ATTACAATGC TTAAAGGCGC ATTAGCAGAA TTGCATGTGG GTAACCCAGA AAAACTGAGT
ACTGACGTAG GTCCTGTTAT TGATCAAAAA GCGCTAGATT CACTCAATGC TCACAGTGAC
TATATGAAAA CCCATGGTCA ACTATTATAT CAATGCGATA TTTCTGATGA GATAACAAAT
GAAATAGCAG ATAACGAACA TTTCTTTTTT GCGCCACGAC TTTATGAAAT AGAGAATATT
AGCGCGCTGA AGGAGGAAGT ATTTGGCCCT TGTGTTCATA TTGTTCGCTT TAAAGGCGAT
GAAATAGAAA AAGTCGTTGA TGATATTAAC GACACAGGTT TTGGCTTAAC GATGGGTATC
CATACCCGTA TTGAACAGCG AGCCTTAAAG TTGGCGAAGC TATCACGAGC AGGTAATGTG
TATATAAATC GCAATATAAT TGGCGCTATT GTGGGTGTGC AACCTTTTGG TGGTCGTGGT
CTTTCAGGTA CAGGGCCAAA AGCAGGTGGC CCATATTATT TAACGCGTTT AGTTAAAGAA
ATAACAACGC CCGCTGCCAA GAAACTTAAT TTAATACCAC AGCAAGCAGA AGCATCAAAC
AGCGATACGG ATGCGCAAGC AGTATTATTT ATGGACAAAG CGAGGACAGC AGAAAAAATC
TGGCGCTTGA CCGAGTTAAA TACCCGTATA TCTTGTGTTA GCGAAGTGTT AGCAAAAATA
GCTCATATCG ATATCATTAC TAATTTAGCA GACGATTTAA CTAATACTTT AAAAGCGGCG
CGCTCACAAT TAATTGATAT TGAAAAACAC TTGAAAGAAC CAACCGTTTT ACCAGGTCCA
ACAGGTGAGT CTAATATTCT ATATTTAGAA AATCGTGGCA ACATAATCTG TTTTGCTGAC
GAGAATGTTA GTTTTCACTT TTGGTTGCTT TCTGTCGTAA CGGCTTTGGC AACGGGTAAT
ACCGTGATCT CCGTTGTCTC TGACTTGTTT TATGATCAAG CAATCGCTTT TAGAGATGAA
CTTATTGCAA CAGGGGAAGA TGAGAATATT TTTCAAATTG CCCGGTTATG CCATTTAACA
ACGTTGCTGG CACAGCCTGG ATTATCAGGT GTTGTTGTTG ATAGTCATTG CGACCGTGAA
CATTATATCA GTGAGAAATT AGCAGAACGT CAAGGTGCAA TTTTACCGGT GATCAGTTCA
AAATATGTTG ATAATTTAAT GCAGCGATTA TTAACAGAAA AAGCTGTCAG TATTAATACC
ACCGCGACCG GTGGTAATAC GTCACTCATG ACCTTAGATG AAGAAGATTA A
 
Protein sequence
MLFNNSNITA SPIRQKIREF YRIDESIAVE HILPLAEVND NAASRAWEKA RKMSMKIRKD 
ESGNGAVDAL LAEYTLSSEE GVVLMCLAEA LLRVPDKHTQ DALISDKISK GQWDSHLGSS
DSLFVNASSW GLLVTGKMVD YADEREKDSF DLLKKVIGRL GEPVIRKSMN YAMQIMGEQF
VMGETIQDAT DHAAKKARQG FVYSYDMLGE GARTMSDAEK YFKAYQVAID AIGAVARASG
KNDPRKVPGI SVKLTAIHPR YEFAQKERVM AEVAPKLKAL CLQAKSYNIG LTVDAEESER
LDISLDVIEA VFSDDELAGW NGFSMALQAY QKRAIFIVDW LRELTIRVDR KMMVRLVKGA
YWDTQIKNSQ KGGYQHFPLF TRKASTDVSY IACAKKLLEY RDTIFPQFAT HNAYTVATIL
ELAGNDKTSF EFQCLYGMGG SLYDQVVTNE NVQCRIYAPV GPHEDLLAYL VRRLLENGAN
SSFVNAIIDD SQPIESLLRN PVEKMHSLKD KYNGQIIKPI ALYHDQKGVG RDNSKGLDLT
DINTVTPLKT SLDNWLVNNL FSEDDVPEGS IAIRNPAKQS EIIGFQRHHS KDEMLAMVET
AHNAFASWSQ TSVSERADLL CRVADVLEHH MDEFIALCIK EAGKTTQDGI DEVKEAVDFC
RYYAQQAIEL AEDDRIEARG VVLCISPWNF PLAIFVGQVT AAIATGNTVL AKPAQQTSLI
ALRAIELMTS VGLPHGVVQA VIAKGSDVGK VIIPNARIQA VIFTGSIKTA TIISQTLADR
GGDQVPFIAE TGGQNCMLVD STALPEQVVD DVISSGFQSA GQRCSALRVL FLQEDIADNV
ITMLKGALAE LHVGNPEKLS TDVGPVIDQK ALDSLNAHSD YMKTHGQLLY QCDISDEITN
EIADNEHFFF APRLYEIENI SALKEEVFGP CVHIVRFKGD EIEKVVDDIN DTGFGLTMGI
HTRIEQRALK LAKLSRAGNV YINRNIIGAI VGVQPFGGRG LSGTGPKAGG PYYLTRLVKE
ITTPAAKKLN LIPQQAEASN SDTDAQAVLF MDKARTAEKI WRLTELNTRI SCVSEVLAKI
AHIDIITNLA DDLTNTLKAA RSQLIDIEKH LKEPTVLPGP TGESNILYLE NRGNIICFAD
ENVSFHFWLL SVVTALATGN TVISVVSDLF YDQAIAFRDE LIATGEDENI FQIARLCHLT
TLLAQPGLSG VVVDSHCDRE HYISEKLAER QGAILPVISS KYVDNLMQRL LTEKAVSINT
TATGGNTSLM TLDEED