Gene Ping_1458 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_1458 
Symbol 
ID4626017 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp1796742 
End bp1800191 
Gene Length3450 bp 
Protein Length1149 aa 
Translation table11 
GC content41% 
IMG OID639796664 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_942874 
Protein GI119945194 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTTCGAG TATATCATTC AAATCAACTG GCGCTTTTAA AAGATTTATT GGTGGCTTTA 
ATGCAGGGGG CGAAGCTGAC AGACCCTTTT GCAAGCGAAA CGATCCTAGT GCAAAGCCCG
GGTATGGCAC AGTGGTTACA ATTAGAAATA GCACAATCAA CGGGGATCAG TGCAAATATT
GATTTTCCTT TACCTGCAAG TTTCATCTGG CAGCAATTTA AACATGTTTT AAAAGATGTG
CCGGATAAAA GCCCCTTTAA TAAAATGTCG ATGACCTGGC AGATTATGCG GCTCTTACCC
GATTGTTTAG AGGATCCTGA TTTTTCTGCT TTATTACATT ATCTCGAAGA TGATTTATAC
CTGCGTAAGC GTTTCCAACT AAGCCAAAAA ATCGCTGATA TTTTTGATCA ATATTTAGTT
TATCGTCCGG AATGGATTGC AGCTTGGGAA AATGCCTCTG AACAGGAAAT CAGCCAGTGG
CATGCTGAAA ACACCGAATC GATACCTGCG TGGTTAGAGG ATCAGCGTTG GCAAGCCAAA
TTATGGAAAA AACTCACTCT GACTATTGCC GAGTCATTTA AAGCGCAGGG TAAAGCCTAC
CACCGTGCGG GTTTATATAA AGACTTTTTA GACACACTGG CCACTAAAAA AACACTGGAG
CATCTGCCTA AGCGTATTTT TGTATTTGGT ATATCGGCAC TGCCTGAATC TTATCTGCAG
GCGTTATTAG GACTCGCTGA ACATTGTGAT GTGCATTTTT TGTTAACTAA TCCCTGCCGT
TATTATTGGG CTGATATTGT TGATCCTAAA TTGTTAGCCA AACGTTTTGC GCAAAGTCGT
CAGAAATTAA CTGTCAGTGG CGGTGAAATA AAAAATTTAC CCGACTCCAG CTGGCAAAAA
GATGCGTCGC ATTTACAGTG GTCACAAAGC AATGATCCTG ACAATGAAGT GGGTAATCCT
CTTTTGGCTT CTATGGGTAA AATGGGACGT GATTTTCTTT TCCAGTTGTA CTCGTTAGAA
CAACAGGAAG TGGATGCTTT TGTTGATATT ACGCGTGATA GTTTATTGCA TCATATTCAA
GCGGATGTCT TAGACCTGCA GGACAGCAGT CAGGCATTAA GCAAGGATCC TAGCGCGCGT
ATTAGCCTTG CTCCGGAAGG TAACTCTCTC ACCCTACATT TATGCCACAG TGTGATGCGC
GAAGTGGAAA TATTACACGA TAACCTGCTG GCAATGTTTG CGGCAGATAA TAACCTCACG
CCAAAAGATA TTATAGTGAT GGTGCCTGAT ATCGATCAAT ATGCCCCCTA TGTACAGGCG
GTATTTGCCA GTGTAGAACA AAATCGTTAT ATCCCCTTTA GTATTTCTGA TGTCAGTGCT
CAGCAAGAAA ATCCTATTTT GATCAGTTTC TTACAGTTAT TGAATCTCAA CCAGACACGT
TATACTCGGG AAGATATTTT AGCCCTGCTG GAGGTGCCTG CCATATTACA GCGTTTTAAC
TTGAATCAAG ATGAGTTTGT GTTGTTACAA AAATGGATCA ACGAAAGTGG TATTCGTTGG
GGCTTAGATG AAAAAAGTGC TGCACAGTGG GATTTACCCA GACTGTCGCA GAACAGCTGG
TTATTTGGCA TCAGGCGCAT GCTGCTCGGT TATGCCATAA GTGATACTTT GTTTGAAGGT
ATCTCAGCCT ATGATGAAAT ACAGGGTTTG CAGGGGGATT TGTTAGGCCG TTTTATCGAC
TTTATTGATG CTTTAATAAA GTTACAAGAG GGTTTAAAGC AGTCTTATAA TGCCAATCAA
TGGCAGGCTT TTGTGTACCA ACTGCTGGAA GACTTTTACC AGGAAGATGA CGACAACACC
ATGGTCTTAT CTCTTATCCG TAATGAAATG GATAATTTAT TAGACCATAC TGGGCAAGCT
GATTTTACTC AACCTATCTC ATTGTTTGTC TTAATTGAGC ACCTAGAGCA GCATCTGTCG
GATCAGGGAA ACAGCCAGCG TTTTTTAGCG GGGCAAGTTA ACTTTTGTAC CCTGATGCCG
ATGCGTTCTA TTCCCTTTAA AGTTGTTTGC CTGTTAGGCA TGAACGATGG TCAATACCCC
CGTAATATTG TTCCTATGGG ATTTGATTTG ATGGCAGGGC ATCGTAAGCG AGGTGATCGC
TCGCGTCGGG AAGAAGATCG ATATCTCTTT TTAGAAGCAC TGCTGTCGGC ACAGGAAAAA
TTTTATATCA GTTATATTGG CCGGGATATT AATGATAACA GTGAAAAAAT GCCCAGCGTA
TTAGTCTCGG AGTTACTTAA CTATTGCCAG CAAAGCTTTG TATTAAAAGA TAATCAGCAG
GATCAAAACC GGGTTGCAGA AAAAGCGCTC AAGGCGTTTA TCTCTTTTCA CTATCCGATG
CAAAGTTTTA GTGAACGTTA TTATCAGGGC GATGTTAAAA CCTACAATCC GAACTGGTGG
GCGGCATTAA AGGATGCTAA AAATGCAGGG GAAAAGAGTC ACAAGCGCCT TCTGACTCTG
GATCAATCCT TAACTGAAGT ACCATTAGAG CAATTAAAAC AATTTTTAAA ACATCCCTGC
AAGGTGTTTT TTAATCAGCG CTTGGATGTC TACTTTGAAT TAGATGACGA TCAACAGGAA
AATGATGAAC CCTTCTCTTT TAATCATTTG CAGCAGTATG TTCTTAAACA TGAACAGTTT
GAATATGCTC TGGAGGGAAA ATCATTAGAT AATCTTTTTA TTGAAAAGAG GGCTGCTGGT
AAATTACCTT TTGGCGAATT TGCAGCACTG ATTTTCACTA AAGATCTCGA GCCAATGGAG
AACTTGGCGG ATTTAACCAC GAGTTATTTT ATAGGTGAGA TTGAAACCAT TAATATTGAT
ATTCAGTTTG CTGAAAAACG TTTATTCGGT GAGTTAAATG ATCATTGTGA AAAAGGATTA
GTACGGGTTA AAACTGGGAA TATTAAAGGC AAGGATATTT TAACTCTTTG GTTGGAGCAT
CTTTGTTATT GTATCGCTTC CGGCCAAAAT CTGAACTCCA CTCTGCTTGG GCAGAAAGAG
GGGTTCTATT TTAAAGAGCT GCCTGCGGAT TATGCCTACA ACAGAATAAG TGAACTGCTT
GCGTTATATG AAGCGGGTTT GCAGCAACCG CTGCCTTTCT TTATACAGAG TGCTTTTGCC
TGGTGTGAGC AGGTGCATAA ACTTGAGCCC AATTGTTTTG TCTTTGATGA TTTGGAGTTT
GCAACTATTG CCGAAGCCCA GCAGGTGGCA TCGCTCTGTT TCTCAAATGA TCGTGGTTTT
TCGGAAGGAC AGGATCCTTA TATCAATCGA TGTTATGAAA ACCTGGAAGA CCATTGGGAT
GCTTTTCAGC CTTTAGCATT GAAAATATTT ATGCCGATTT TGTCTAATAT AAAGCCAATT
GATTACGATG ACTTAGATGG TGACGAATAA
 
Protein sequence
MFRVYHSNQL ALLKDLLVAL MQGAKLTDPF ASETILVQSP GMAQWLQLEI AQSTGISANI 
DFPLPASFIW QQFKHVLKDV PDKSPFNKMS MTWQIMRLLP DCLEDPDFSA LLHYLEDDLY
LRKRFQLSQK IADIFDQYLV YRPEWIAAWE NASEQEISQW HAENTESIPA WLEDQRWQAK
LWKKLTLTIA ESFKAQGKAY HRAGLYKDFL DTLATKKTLE HLPKRIFVFG ISALPESYLQ
ALLGLAEHCD VHFLLTNPCR YYWADIVDPK LLAKRFAQSR QKLTVSGGEI KNLPDSSWQK
DASHLQWSQS NDPDNEVGNP LLASMGKMGR DFLFQLYSLE QQEVDAFVDI TRDSLLHHIQ
ADVLDLQDSS QALSKDPSAR ISLAPEGNSL TLHLCHSVMR EVEILHDNLL AMFAADNNLT
PKDIIVMVPD IDQYAPYVQA VFASVEQNRY IPFSISDVSA QQENPILISF LQLLNLNQTR
YTREDILALL EVPAILQRFN LNQDEFVLLQ KWINESGIRW GLDEKSAAQW DLPRLSQNSW
LFGIRRMLLG YAISDTLFEG ISAYDEIQGL QGDLLGRFID FIDALIKLQE GLKQSYNANQ
WQAFVYQLLE DFYQEDDDNT MVLSLIRNEM DNLLDHTGQA DFTQPISLFV LIEHLEQHLS
DQGNSQRFLA GQVNFCTLMP MRSIPFKVVC LLGMNDGQYP RNIVPMGFDL MAGHRKRGDR
SRREEDRYLF LEALLSAQEK FYISYIGRDI NDNSEKMPSV LVSELLNYCQ QSFVLKDNQQ
DQNRVAEKAL KAFISFHYPM QSFSERYYQG DVKTYNPNWW AALKDAKNAG EKSHKRLLTL
DQSLTEVPLE QLKQFLKHPC KVFFNQRLDV YFELDDDQQE NDEPFSFNHL QQYVLKHEQF
EYALEGKSLD NLFIEKRAAG KLPFGEFAAL IFTKDLEPME NLADLTTSYF IGEIETINID
IQFAEKRLFG ELNDHCEKGL VRVKTGNIKG KDILTLWLEH LCYCIASGQN LNSTLLGQKE
GFYFKELPAD YAYNRISELL ALYEAGLQQP LPFFIQSAFA WCEQVHKLEP NCFVFDDLEF
ATIAEAQQVA SLCFSNDRGF SEGQDPYINR CYENLEDHWD AFQPLALKIF MPILSNIKPI
DYDDLDGDE