| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1313 |
|---|
| Symbol | |
|---|
| ID | 4625845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 1630651 |
|---|
| End bp | 1632282 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 639796527 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_942737 |
|---|
| Protein GI | 119945057 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTACA TATACAGCAT TAAAGGAAAA TTGCTTTTGG TCTTTATCTC TGCAGTCCTG
GTATTTAGCA GCGATGACTT GCTAAAGATC TATTTTATTA AGCAGTTCAC CTTCTCGATA
GAAAAATTCG TTTCAACCGC AGTACCTATG ATAAACGCGG CCAACGAACT TGAAGTTATT
GGGAATAGTA TCGCGCTACA AACCAATCGT CTTATCGGGG CCCAACAACA AAAAAAATTG
ACGGATTCTT ATATATCGAT TGGCAAATTA TTAGACGAAT TGGAAATAAA AACCTCTGCC
ATCTCACTGG AAGGGGGAGA TATTAATGTG CTAACAGTGA ACAGTCTGAG CCAGTCAATC
CGCTCCCTGT CACAAATTGT GTTTCAAGTT ATCAATAGTA GTTTTACAAA AGAAGATCAG
GCGCGGAGTG TAGCTGCTTC GGAATTAGAG ATTTTAGAGA CTATACGCAA CGACGTTCTT
GATGCTTACA CACAACAAAC TGCGACAGTG ATAGATACTG CTCTTTTTGC GAGTATCCAA
GACATCACCA TCTGTATGGT CGTTTCGATC GAACGCGCCC TTTATGCTGA AACGTTACAA
CAGCTAAAAA AACAAGAAGA TGAATTCCTT CTTTGCAGTG AAAAGCTAAT GGCTGAAGTG
AGCGAAAATA AGTCTTCGTT GGCACACTCC TCCACCATCG TGCAATGGCT GAATACGCCT
TCAGAACAAA GGAACAGAGT TTTTGAAATT AAACAGCGCG TATTGTTCTT GCAGGTGTCT
GCTAAAAAAT ATCTAACAGA ATTGGATCAA CTTGCCGATC AGCTAACATC ACTCACGTCA
GATTATAGAC AACGAATTTT TCGTCGCTTT CAAACCACTG CCGATGCCGC AATCGTTCAA
GAAAAAAGAG CCATCAATCT CACCGTGATC CTTAATATTA TTGCCGCTAC ACTGCTGTTA
ATTTTTTACT GGATAATTGT CGTACGCGGC TTTGGTAACC GTCTGACGAT AATCAGTCAG
GCCATGCGTA GTATCCCTAC CAGCGATTCA GATACCAAAA TTCGGGTTCG GGGGCGTGAT
GAAATTGCTG CCATGGCACG CGCTTTAGAG CGATTACTAA AGGAGGCTTT GCTGACACAT
CAGATGGCAA CCATTGACCA CCTAACACAG GTAAACAATC GGGCCAGCTT TTTTACTTAT
GCGGAAAAAG AGACTGAGCG CTCCAAAAGA CGACCAAATA AAACCTGCAT CATGATGATA
GATATCGATC ATTTTAAACA TATCAATGAC ACCTACGGCC ATGATGTTGG AGATAAACTT
TTGTCCTTGG TGGCGGATAA CTGCCTAAAG TGTACAAGAA CTATTGATGT ATTTGCCCGC
CTGGGGGGTG ACGAATTCAC CTTGATGATG CCGGACACTG ATCTTGTATC AGGAAGACTG
GCGGCAGAAC GATTACGACA ACGCATCGAT GAGTTACAGC TGGAGCTTAC ACCTGACGTT
ATAATAAAAG TGACCACAAG TATTGGGATA TCTGTGGTCA AGCTAAATGA AACCCCCATT
GAAACCGCAT TAATTCAGGC CGATAAAGCA CTCTATCTGG CCAAAACTGG TGGACGGAAT
CAAAGTAAAT AG
|
|---|
| Protein sequence | MSYIYSIKGK LLLVFISAVL VFSSDDLLKI YFIKQFTFSI EKFVSTAVPM INAANELEVI
GNSIALQTNR LIGAQQQKKL TDSYISIGKL LDELEIKTSA ISLEGGDINV LTVNSLSQSI
RSLSQIVFQV INSSFTKEDQ ARSVAASELE ILETIRNDVL DAYTQQTATV IDTALFASIQ
DITICMVVSI ERALYAETLQ QLKKQEDEFL LCSEKLMAEV SENKSSLAHS STIVQWLNTP
SEQRNRVFEI KQRVLFLQVS AKKYLTELDQ LADQLTSLTS DYRQRIFRRF QTTADAAIVQ
EKRAINLTVI LNIIAATLLL IFYWIIVVRG FGNRLTIISQ AMRSIPTSDS DTKIRVRGRD
EIAAMARALE RLLKEALLTH QMATIDHLTQ VNNRASFFTY AEKETERSKR RPNKTCIMMI
DIDHFKHIND TYGHDVGDKL LSLVADNCLK CTRTIDVFAR LGGDEFTLMM PDTDLVSGRL
AAERLRQRID ELQLELTPDV IIKVTTSIGI SVVKLNETPI ETALIQADKA LYLAKTGGRN
QSK
|
|---|
| |