| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1207 |
|---|
| Symbol | |
|---|
| ID | 4623758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 1510787 |
|---|
| End bp | 1511905 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639796422 |
|---|
| Product | hydrogenase formation HypD protein |
|---|
| Protein accession | YP_942638 |
|---|
| Protein GI | 119944958 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0409] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.115302 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATAA GTAAAAAATT CAATCCGGAT GCCTTTAAAG ATCGGGAGAT AGTTAATAAA
CTGGCGCAGG AGATAAAATT AATCGCTGCG CAAATGGCCC CGCTAAAAAT AATGCATATT
TGCGGCGGCC ATGAAAATGC CATTGTCCGC TATGCCATCC GCCAATTTTT ACCCGCACAT
ATTAAGGTTA TCGCAGGTCC AGGTTGCCCG GTCTGCGTTT GCCCGGTAGA GTCAATCGAT
GAAGCAATCA CCCTTGCCCT GCTGCCCAAA GTTACCCTGC TCACTTTCGG CGATATTCTG
CGGGTGCCCG CAACTAACAG CTCCTTAGAG GAAGCCCGCG TCAATGGCGG CAGTGTAAAA
GTCGTCTATA GCCCCCTTGA TGCGATCAAA TTTGCCCAAG ATTCGCCGCA GCAGACCTTT
GTTTTTTTCT CTGTCGGTTT TGAAACAACC GCAGCGGGCA TTGCTGGACT GATCCACTCG
GGTGTCCCCA AAAACCTCTT TTTTCTGATA GCCAATCGTT ATATGCCGCC AGTATTGAAA
TTATTGATGG AGGTCCATGA TGACAGCCTG CAGGGATTTC TACTGGCAGG CCATGCAACC
GCCATTACCG GCTTGGGGGT TTATGATTTT ATGCGCGACG AGTTTAAGCT GCCTTGTGCC
ACGGCAGGTT TTGAACCCGT TGATATCCTG CTGGCGATTC GCGAACTGTT AACACTTATC
AAAAACGATC AGCATCAAGT GATTAACTGC TACAGCAGAG TGATTAAAAA TGAGGGCAAT
CTGAAAGCGC AACAATGTCT TAAGGAAGTG TTTGATCTTA TACCCGGCGT GTGGCGCGGA
ATAGACAAAG TGGAAGATTC TGCCTACGTG CTTAAAGATA AATACGCCTT TCTTGACGCC
AGGAAACAGC TTGCCTGTAA ACCGCCCTAT TCGCCGCAAG CCCATCATCC GAGCTGTCTC
TGTCATAGAG TAATGCTCGG CGAGGTAGAG CCTCAGGATT GTAAATTATT TAAAAAAGCC
TGCACCCCGA GCAAACCCTT CGGTCCGTGC ATGGTTTCCC CCGAAGGTAC CTGCCATGTA
CGCTATAGCT ATTCTGAAAT CAAAATAGAC TCTCTGTAA
|
|---|
| Protein sequence | MTISKKFNPD AFKDREIVNK LAQEIKLIAA QMAPLKIMHI CGGHENAIVR YAIRQFLPAH
IKVIAGPGCP VCVCPVESID EAITLALLPK VTLLTFGDIL RVPATNSSLE EARVNGGSVK
VVYSPLDAIK FAQDSPQQTF VFFSVGFETT AAGIAGLIHS GVPKNLFFLI ANRYMPPVLK
LLMEVHDDSL QGFLLAGHAT AITGLGVYDF MRDEFKLPCA TAGFEPVDIL LAIRELLTLI
KNDQHQVINC YSRVIKNEGN LKAQQCLKEV FDLIPGVWRG IDKVEDSAYV LKDKYAFLDA
RKQLACKPPY SPQAHHPSCL CHRVMLGEVE PQDCKLFKKA CTPSKPFGPC MVSPEGTCHV
RYSYSEIKID SL
|
|---|
| |