Gene Ping_1193 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_1193 
Symbol 
ID4623592 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp1485929 
End bp1487758 
Gene Length1830 bp 
Protein Length609 aa 
Translation table11 
GC content41% 
IMG OID639796407 
Productexcinuclease ABC, C subunit 
Protein accessionYP_942626 
Protein GI119944946 
COG category[L] Replication, recombination and repair 
COG ID[COG0322] Nuclease subunit of the excinuclease complex 
TIGRFAM ID[TIGR00194] excinuclease ABC, C subunit 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGATT TTTGCCCGAC CGATTTTTTA AAAACGGTCA CCTCTGAACC GGGTGTCTAC 
CGCATGTTTA ACCAACAAAA AGTGATTTAT GTTGGTAAAG CAAAAAACCT GAAAAAACGC
CTCAGCAGTT ATTTTAGCCT TACCCAAAAA CACCCTAAAA CATTAGCGCT GGTCAGTCAT
ATTGACAGAA TTGAAGTGAC GGTCACGCAC ACTGAAACTG AAGCACTGAT CCTCGAACAC
AACTTTATCA AGCGTTACAA GCCTCATTAT AATGTGTTGT TACGTGATGA TAAGTCTTAT
CCTTACCTGT TTTTAAGTGA CCATAAACAT CCACAACTGA CTTTAGTGCG TACCCAAAAT
AGTAAACGAA AAGGGACCTA TTTTGGCCCC TATCCGAGTG GTGGGGCGGT GAGAGAAAGT
CTGCATTTAA TGCAAAAACT GTTTCCAATA CGTCAATGTG AAGACAGTTA TTACAGCAAT
CGCTCCCGTC CCTGTCTGCA GTATCAATTA AAACGTTGTC TTGCGCCCTG CGTCAATGCG
ATGCCGGAAT CTGAATATCA GCACCAAGTT GAATTAGCCA GTGCCTTCTT ACAAGGTAAA
AGTCAAAATG TGATAAATCA GCTGGTTGAT GAAATGGAAG TGGCAAGTCA GACCCTTGAA
TTTGAGAAAG CAGCGGTGCG ACGCGATCAA ATCCAATCCT TAAAAAAAGT GCAGGAACAG
CAATGGGTCA GCGGTGATAT TGAACAGTTA GATGTTGTCG GTTTCAGTTA TGAGCAAGGT
TTTGCCAGTA TACACCTACT GTTTGTCCGT CAGGGGCGAA TATTAGGTAG CCGTAATTAT
TTTCCTAAAA TCCCCAAAAA CTCGAGTAAA GATGAAGTGT TAAGCGCTTT TTTAAGCCAG
TTTTATCTGT CCGGGCAAAA TGGACGCGCA ATACCAAGGG AAATTTTGCT CAGTGATGAT
TTTGCTGAAC GTGCTATTTT TACTGATTTA TTTACTGAAT ATTGTGGCTA TAAAACAGCA
TTAAAAGTAG ATGTGCGTGG TGAGCGTGCG AGGTTTGTCA AACTGGCACA AAAAAATGCC
CAAATAGCAT TACAGAGCCA TCTCAGCCAA AAAAACAACA TATTAAAGCG TTATCAGCTG
CTGGAGGCGA AATTGGACTT AAGTAAACCG ATTTTGCGCA TGGAATGTTA TGATATTTCG
CATATGATGG GGGAAAAAAC AGTCGCATCC TGTGTTGTGT TTAATCGTGA GGGGGAAAAA
AAATCTGATT ACCGTCGTTT TAATATTACT GGTATTACGC CTGGCGATGA CTATGCGGCA
ATGGGACAAG TGCTAGCGCG ACGTTTTAAA GCGCTGCAGG AGACAGAAAA CATTCCTGAT
ATTATTTTTA TCGACGGGGG GGTGGGGCAA TTAAACCAAG CTGAAAATAT TATTAGCTCT
CTTGAAGAAA ACTTTAAAGA TAAATACCCG TTATTGATAG GTATTGCCAA AGGCGAAGGC
CGTAAGCCTG GCTTAGAAAC ACTTATTTTA GCCGGAACCC ACGAAATTAT TGAATTGAGC
AGTGATTCAC CTGCGCTGCA TTTAATACAG CAAATTCGTG ATGAATCGCA TCGTTTTGCG
ATTATGGGGC ATCGCCAGCA ACGTGATAAA ACAAGAAGAA CAAGTACATT AGAAAATATC
AGTGGAGTAG GCACTAAACG TCGTCAGGCG TTATTAAACC ACTTAGGGGG ATTACAGGGT
GTTATGTCCG CAAGTATTGA CGAATTGCAA AAAATTCCCG GCATAAGCGC TTCATTAGCT
GAAACAATTT ATGAAGCTTT GCATAATTAA
 
Protein sequence
MSDFCPTDFL KTVTSEPGVY RMFNQQKVIY VGKAKNLKKR LSSYFSLTQK HPKTLALVSH 
IDRIEVTVTH TETEALILEH NFIKRYKPHY NVLLRDDKSY PYLFLSDHKH PQLTLVRTQN
SKRKGTYFGP YPSGGAVRES LHLMQKLFPI RQCEDSYYSN RSRPCLQYQL KRCLAPCVNA
MPESEYQHQV ELASAFLQGK SQNVINQLVD EMEVASQTLE FEKAAVRRDQ IQSLKKVQEQ
QWVSGDIEQL DVVGFSYEQG FASIHLLFVR QGRILGSRNY FPKIPKNSSK DEVLSAFLSQ
FYLSGQNGRA IPREILLSDD FAERAIFTDL FTEYCGYKTA LKVDVRGERA RFVKLAQKNA
QIALQSHLSQ KNNILKRYQL LEAKLDLSKP ILRMECYDIS HMMGEKTVAS CVVFNREGEK
KSDYRRFNIT GITPGDDYAA MGQVLARRFK ALQETENIPD IIFIDGGVGQ LNQAENIISS
LEENFKDKYP LLIGIAKGEG RKPGLETLIL AGTHEIIELS SDSPALHLIQ QIRDESHRFA
IMGHRQQRDK TRRTSTLENI SGVGTKRRQA LLNHLGGLQG VMSASIDELQ KIPGISASLA
ETIYEALHN