Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_1193 |
Symbol | |
ID | 4623592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | + |
Start bp | 1485929 |
End bp | 1487758 |
Gene Length | 1830 bp |
Protein Length | 609 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 639796407 |
Product | excinuclease ABC, C subunit |
Protein accession | YP_942626 |
Protein GI | 119944946 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTGATT TTTGCCCGAC CGATTTTTTA AAAACGGTCA CCTCTGAACC GGGTGTCTAC CGCATGTTTA ACCAACAAAA AGTGATTTAT GTTGGTAAAG CAAAAAACCT GAAAAAACGC CTCAGCAGTT ATTTTAGCCT TACCCAAAAA CACCCTAAAA CATTAGCGCT GGTCAGTCAT ATTGACAGAA TTGAAGTGAC GGTCACGCAC ACTGAAACTG AAGCACTGAT CCTCGAACAC AACTTTATCA AGCGTTACAA GCCTCATTAT AATGTGTTGT TACGTGATGA TAAGTCTTAT CCTTACCTGT TTTTAAGTGA CCATAAACAT CCACAACTGA CTTTAGTGCG TACCCAAAAT AGTAAACGAA AAGGGACCTA TTTTGGCCCC TATCCGAGTG GTGGGGCGGT GAGAGAAAGT CTGCATTTAA TGCAAAAACT GTTTCCAATA CGTCAATGTG AAGACAGTTA TTACAGCAAT CGCTCCCGTC CCTGTCTGCA GTATCAATTA AAACGTTGTC TTGCGCCCTG CGTCAATGCG ATGCCGGAAT CTGAATATCA GCACCAAGTT GAATTAGCCA GTGCCTTCTT ACAAGGTAAA AGTCAAAATG TGATAAATCA GCTGGTTGAT GAAATGGAAG TGGCAAGTCA GACCCTTGAA TTTGAGAAAG CAGCGGTGCG ACGCGATCAA ATCCAATCCT TAAAAAAAGT GCAGGAACAG CAATGGGTCA GCGGTGATAT TGAACAGTTA GATGTTGTCG GTTTCAGTTA TGAGCAAGGT TTTGCCAGTA TACACCTACT GTTTGTCCGT CAGGGGCGAA TATTAGGTAG CCGTAATTAT TTTCCTAAAA TCCCCAAAAA CTCGAGTAAA GATGAAGTGT TAAGCGCTTT TTTAAGCCAG TTTTATCTGT CCGGGCAAAA TGGACGCGCA ATACCAAGGG AAATTTTGCT CAGTGATGAT TTTGCTGAAC GTGCTATTTT TACTGATTTA TTTACTGAAT ATTGTGGCTA TAAAACAGCA TTAAAAGTAG ATGTGCGTGG TGAGCGTGCG AGGTTTGTCA AACTGGCACA AAAAAATGCC CAAATAGCAT TACAGAGCCA TCTCAGCCAA AAAAACAACA TATTAAAGCG TTATCAGCTG CTGGAGGCGA AATTGGACTT AAGTAAACCG ATTTTGCGCA TGGAATGTTA TGATATTTCG CATATGATGG GGGAAAAAAC AGTCGCATCC TGTGTTGTGT TTAATCGTGA GGGGGAAAAA AAATCTGATT ACCGTCGTTT TAATATTACT GGTATTACGC CTGGCGATGA CTATGCGGCA ATGGGACAAG TGCTAGCGCG ACGTTTTAAA GCGCTGCAGG AGACAGAAAA CATTCCTGAT ATTATTTTTA TCGACGGGGG GGTGGGGCAA TTAAACCAAG CTGAAAATAT TATTAGCTCT CTTGAAGAAA ACTTTAAAGA TAAATACCCG TTATTGATAG GTATTGCCAA AGGCGAAGGC CGTAAGCCTG GCTTAGAAAC ACTTATTTTA GCCGGAACCC ACGAAATTAT TGAATTGAGC AGTGATTCAC CTGCGCTGCA TTTAATACAG CAAATTCGTG ATGAATCGCA TCGTTTTGCG ATTATGGGGC ATCGCCAGCA ACGTGATAAA ACAAGAAGAA CAAGTACATT AGAAAATATC AGTGGAGTAG GCACTAAACG TCGTCAGGCG TTATTAAACC ACTTAGGGGG ATTACAGGGT GTTATGTCCG CAAGTATTGA CGAATTGCAA AAAATTCCCG GCATAAGCGC TTCATTAGCT GAAACAATTT ATGAAGCTTT GCATAATTAA
|
Protein sequence | MSDFCPTDFL KTVTSEPGVY RMFNQQKVIY VGKAKNLKKR LSSYFSLTQK HPKTLALVSH IDRIEVTVTH TETEALILEH NFIKRYKPHY NVLLRDDKSY PYLFLSDHKH PQLTLVRTQN SKRKGTYFGP YPSGGAVRES LHLMQKLFPI RQCEDSYYSN RSRPCLQYQL KRCLAPCVNA MPESEYQHQV ELASAFLQGK SQNVINQLVD EMEVASQTLE FEKAAVRRDQ IQSLKKVQEQ QWVSGDIEQL DVVGFSYEQG FASIHLLFVR QGRILGSRNY FPKIPKNSSK DEVLSAFLSQ FYLSGQNGRA IPREILLSDD FAERAIFTDL FTEYCGYKTA LKVDVRGERA RFVKLAQKNA QIALQSHLSQ KNNILKRYQL LEAKLDLSKP ILRMECYDIS HMMGEKTVAS CVVFNREGEK KSDYRRFNIT GITPGDDYAA MGQVLARRFK ALQETENIPD IIFIDGGVGQ LNQAENIISS LEENFKDKYP LLIGIAKGEG RKPGLETLIL AGTHEIIELS SDSPALHLIQ QIRDESHRFA IMGHRQQRDK TRRTSTLENI SGVGTKRRQA LLNHLGGLQG VMSASIDELQ KIPGISASLA ETIYEALHN
|
| |