| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1127 |
|---|
| Symbol | |
|---|
| ID | 4625047 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 1411589 |
|---|
| End bp | 1415473 |
|---|
| Gene Length | 3885 bp |
|---|
| Protein Length | 1294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 639796342 |
|---|
| Product | membrane protein-like protein |
|---|
| Protein accession | YP_942563 |
|---|
| Protein GI | 119944883 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3164] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.334782 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.712644 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAATTCT GCTCTTTAAA ATGGCTTAAA CGGATATATG CATTAATTGC AGTTAAGCTG
TTTATTTTAG CTTTTTTATT AACCTTATCA CGCATTATAT TTGTCAGAAT TGACGACTAT
AAAATCTATG CAATGCAATG GTTAAGCTCC GAATATAATG TTAATTTAAC CTTTGAAGAT
ATCTCTGCCG GTATTGACTT CTCAGGACTT ATTTTAAATG TCAGCGGGAT TGAATTGGTC
GATTCTGTTG ATCTGCCTTA TCAGTTTAAA CTTGATCATT TGTTTATTTA CCTTAATTTT
TGGCAGAGCC TCAGCGAACA AACCTTAGTG TTTAACCGAA TATCTGCGCA GGGTGCAGAT
ATTACAATTA AACCAACCGG GAAAAATAAT GCTAAATCTG AAAGCTCCTC TGTCACTACG
GCGGCATTGC AGAAAATTTT ATTAGTGCAA CTGAGTAAGT TTTCAATAAA AGATAGCCAG
CTTCATTTTA CAGATCCCCT GCAACGCAAT AAAACGGTTG TGATAGAAAA GTTAAATTGG
ATAAACGAAG AAGGGCGTCA CCAGGGGAGA GGTTATGCTT CAATGCTCAA CGGCCTTGCC
GATAACTCTC TGAATTTTGT GGTGGATTTA GTTGGACAAA ATGAGCCTTT GGCTGGTCAT
CTTTATGTTG CAGCCGATAA CTTCAATATT AGTCATTATT TAACTGCACA AGTAAATCCT
AATGCGCAAC TATTTGATGC GGTATTAGGT TTTAAAGCTT GGGCTGAATT TTCCTCTAAT
AGACTGCAAA AGCTGCAATT GCAATTAAAT AACACCCAAT TGCATTGGTC ACAATTGGGG
CAAGATTATC TATGGAAGAT AAACAGTGGA TTGGTGCAAT TTACAAACAC TAATGACGCG
TGGTTATTAG ACAGTTACAA TCTTGATATA GAGTCAAACC AAAAAAAAAT GCAAGGTCTT
AATGTTCAAG GGCACGGTAC GGCAGCGAGT GCTTATTTTG CACTTGATGG GGTAAACATA
AAAGATTTAA TGCCTTTATA TTTATTACGT TCTGATTTAC AAGCAAAAAC AATAAATTCC
TTGTCAGCTT TTGACCTTAA CGCACGACTC GATGATTTTT CACTGTTTAA AAACAGTGCG
GATAAGCTGC AGTTTTCTGC CCATCTAAGC CAATTTAAGA GCGAACCTCA AGGTGCCATG
CCCGGAATAA GTGATGCTCA GATTGACGTT ATTGGTGATC TTTCAAAAGG TAAGTTAAAT
ATTACCTTAC CTAAACAGAG TCTCACTTTT GATGGGCAAT TTAGCCGAGA AATGCCGCTT
GAAAGTGCGC AACTTGATTT ACAATGGTTA CAAATGCCTA CTGGATTTAA AGTGTTTAGT
GAGCATACGG TATTAAATAC GCGCGATCTT AATAGCACTA CTGCGTTTTC ACTTTTTTTC
CCCAATCAAG ACCAGAAAAA TCAAAGTCCT TTTTTAAGTT TGTATAGCTA TGCAGATCTC
AATGATGCCA GTAAAGCACA ATATTATTTA CCCGTTAAAG CGCTGGGTAA TAAAGTCTTT
AATTACCTGC AGCCAACCCT AAAAAAAGGA CAGGTAAAGG GGGCGAAAAT ATTATGGTAC
GGTGCATTAA ATCAATATCC CTACGGTCAG AATAACGGCA TTTTCCAGGC TTGGGTACCA
TTACGAGGAT CCGAATACGA TTTTTATGGC GACTGGCAAG GACTCACCAA TCTCGATTTA
GATATTCTCT TTGAGAATGA TGGACTGACT ATGAATGCGC ATAGCGCCTC TTTGCAGGAG
GTGGAGGTTA AAAAATTGAC GGCGAGCATT GATCATTTAA ATCCCAATGG CATTTTAACT
GTTAACGCAG AAATCACTGA AGACGCACAA AAAATAAGTG ACTATTTAAA AGCTTCTCCT
CTTAAGGAAA GTGTGGGTAA AGCACTCTCG GTTATTGAAG TCGAAAAAAA ATTAACCGGT
GCACTAACGT TAACCATCCC TTTTAATCAA AAAACGCAGA AGAGCAAAAC CTTGGGCACC
ATTCAGCTGG CAAAAAATAA TGTTAATATT AAGTTAGCTG AAGATCTGAT CCTGCCTTTA
AAAAACGTGC GGGGAGAGTT TAGTTTTATC AATGGCAACT TGATGGCAAA TAACCTTCAG
GGCCAATTAT TTGAACAACC AATACAGATT TCTTTTAACA GTGAAGCACA ACAAGACAGA
TATCAAGTGA ACGCCGATTT GTCAGGAAAT TGGGATTTGA TGGGATTAAC AGATGCACAA
ACCATTCTGA ATCCGCTAAA AATATCAGGA CAATTAGATT GGGCTGCCGC GATAAACTTT
GATAATTTTC TGGCGAGTGG TTATCAATAT AATGTTGCCT TTAATTCTGC AACACGGGGA
GTGGATATCG CGCTTCCTTA TCCCTTTGAA AAAAATGCGT TGCAATCCTG GCCGACAGAT
ATCGTTGTTT CAGGTGACCA AAACAGCAGC ACTATTGAGG CAAAAATAAA AAACACCTTG
TGGTTTAGTG GAATCGTTGA CTATCGAGAA AAACACAATA ATATTCCCTA TTTTGTGCTT
AATATAGGGA CGGATAATGT CTCTGAAATT GATAAAACCA AGCAGGTTAT TAATGTTAAT
CTGGATAACC TTAATATCGC CAGTTGGTAT CAAAAATGGG TGTTGTTTGA CAAGTGGAGG
GGCAAGCTTA AGACACAAGG AAAAAGCAGT CAAAGGATTA AGTTGGATGA AATTAACGTC
AGCATTCAAC ATGCTGATTT ATTTTCACAA CCCTTAAATA ATTTAAAAGT ACGCGCTGTC
AACGATCATA AAAAGTGGGA TATGGCCGTT GACTCTGATA ATTTACAAAC AGCAGTGGAG
TTGCGCAATG GAGAACCTAT GCGGCTCGAT TTTGATATTA AAAAGTTGAA TTTCCACTCG
CTGGATTTAT CAAATATCAA TGCAGATCAA GGATTGGACT CAAATAATCA AGCACAAGAT
CGTAATTTAT TGAAGGATTA CCCCGAAATT TTGGTTGATT GCTTAGAGTG TATTTATGGC
GATATAAATT TATCGCCAAT GCGCCTGCAT ATTTTTCCTA ACAAAAAAAA TCTTAATATT
AATTACATTA AAATTGGGAA TGAGAAAGAA TTTACCGAGA TATCAGGCGT TTGGGATCAA
TATAAAACTA ACCTGATTGT TAAAAGTGTC GGTAACGAGG TCAACGATAT TGTAAAAAGG
CTAGGTTATA GCAGCCCGAT GATCTATTCT AAAGCTGAAT TAAGCGGGGC TTTAAATTGG
ATTGGCGCAC CCTGGTCTTT TAATTTAGAT TCTTTGAAGG GTACTTTTTC TGCCAAATTA
ACCGATGGTG CTATCACTGA GGTTAATGAT AACGGTGCGC GTTTATTAAG TTTATTTAGT
CTTGATGGGA TTCGCCGCAC ACTAAACAAT GAATTTAACA ATGTATTTTC AAAAGGTTTG
AATTTTGATC AAGCAAACTT TTCAGGTAGT ATTACCGATG GTATTGTTAA AAATGATGAT
TTTTATTTAA ATGGCTCTGC CGGGAAAATA TCAGGTAAGG GGCTTATCGA CTTGCCAAAT
AATGATACTA ATTATCAGAT TAGTTACAGC CCTGCAATCA CCTCAAGTTT ACCCGTTTTA
ACTGCATTTG TGATAAGTCC CTTGACCGGA GCTGCCGTTT TTATGTTGGC TAAAATTTTA
GAACCTGTTG TAGAGACGAT TATTCGAGTT GATTTTACGG TTAAAGGTCC GTTGAATTCA
CCTGAAATCA AACTTATCAA CAGAAAAAAA GGTAAAGTAA CACTGCAAAA CACTGAAGTG
CTTCATGCAA TAGAAGAACT CAAGCAAAAA AATGCCAAGA GTTAA
|
|---|
| Protein sequence | MKFCSLKWLK RIYALIAVKL FILAFLLTLS RIIFVRIDDY KIYAMQWLSS EYNVNLTFED
ISAGIDFSGL ILNVSGIELV DSVDLPYQFK LDHLFIYLNF WQSLSEQTLV FNRISAQGAD
ITIKPTGKNN AKSESSSVTT AALQKILLVQ LSKFSIKDSQ LHFTDPLQRN KTVVIEKLNW
INEEGRHQGR GYASMLNGLA DNSLNFVVDL VGQNEPLAGH LYVAADNFNI SHYLTAQVNP
NAQLFDAVLG FKAWAEFSSN RLQKLQLQLN NTQLHWSQLG QDYLWKINSG LVQFTNTNDA
WLLDSYNLDI ESNQKKMQGL NVQGHGTAAS AYFALDGVNI KDLMPLYLLR SDLQAKTINS
LSAFDLNARL DDFSLFKNSA DKLQFSAHLS QFKSEPQGAM PGISDAQIDV IGDLSKGKLN
ITLPKQSLTF DGQFSREMPL ESAQLDLQWL QMPTGFKVFS EHTVLNTRDL NSTTAFSLFF
PNQDQKNQSP FLSLYSYADL NDASKAQYYL PVKALGNKVF NYLQPTLKKG QVKGAKILWY
GALNQYPYGQ NNGIFQAWVP LRGSEYDFYG DWQGLTNLDL DILFENDGLT MNAHSASLQE
VEVKKLTASI DHLNPNGILT VNAEITEDAQ KISDYLKASP LKESVGKALS VIEVEKKLTG
ALTLTIPFNQ KTQKSKTLGT IQLAKNNVNI KLAEDLILPL KNVRGEFSFI NGNLMANNLQ
GQLFEQPIQI SFNSEAQQDR YQVNADLSGN WDLMGLTDAQ TILNPLKISG QLDWAAAINF
DNFLASGYQY NVAFNSATRG VDIALPYPFE KNALQSWPTD IVVSGDQNSS TIEAKIKNTL
WFSGIVDYRE KHNNIPYFVL NIGTDNVSEI DKTKQVINVN LDNLNIASWY QKWVLFDKWR
GKLKTQGKSS QRIKLDEINV SIQHADLFSQ PLNNLKVRAV NDHKKWDMAV DSDNLQTAVE
LRNGEPMRLD FDIKKLNFHS LDLSNINADQ GLDSNNQAQD RNLLKDYPEI LVDCLECIYG
DINLSPMRLH IFPNKKNLNI NYIKIGNEKE FTEISGVWDQ YKTNLIVKSV GNEVNDIVKR
LGYSSPMIYS KAELSGALNW IGAPWSFNLD SLKGTFSAKL TDGAITEVND NGARLLSLFS
LDGIRRTLNN EFNNVFSKGL NFDQANFSGS ITDGIVKNDD FYLNGSAGKI SGKGLIDLPN
NDTNYQISYS PAITSSLPVL TAFVISPLTG AAVFMLAKIL EPVVETIIRV DFTVKGPLNS
PEIKLINRKK GKVTLQNTEV LHAIEELKQK NAKS
|
|---|
| |