Gene Ping_1121 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_1121 
Symbol 
ID4625041 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp1404550 
End bp1405467 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content39% 
IMG OID639796336 
Productdiguanylate cyclase 
Protein accessionYP_942557 
Protein GI119944877 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.323017 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGATT CAATTGAATT TCTTAAATCA GTACTTAATA CGATCACCGA CCAGATAGTT 
GTTATAGATA AGAACGGTGA TATAAAATTT GTCAATCACA GCTGGACTGA GTTTGGCCGG
GATAATGATT GTCAAATAAA GACTGAATGG ATTGGCATAA ATTACCTTAA TGGATATGAT
AATACTTCTG GGGCAGACGC TGATTTCGGC GTTACGGCAG TAAATGGAAT TCGAGCCGTC
ATTATCGGGC AACAGCCTGA TTTTTACCTT GAATATGCTT GTCATAGTCC AGATGAAAAA
CGATTTTTCA TGATGCAGGT AACACCTTTT ATACATCAGG AAGTCCAATT TTTTGTCATC
TCTCATAAAA ATATTACTAA TCGAAAGTTA GCCGAGGAAA AAGTCCTTCA CTTATCCCAG
ATTGATGGTC TCACCGGTAT TGCCAATAGG CGATATTTTG ATGAGACCCT TGAAAATGAG
TGGAAGCGCT GTGCTCGTTC AAAACAACCA CTTACACTTG CCATGATTGA TGTTGATCAT
TTTAAGTTGC TCAATGACAC ATATGGGCAT CAAGCCGGTG ATAATAGTCT GGTAATGATT
GGCAATCTGC TTAAAGACTT AGCTCAAAGA CCTGCCGACC TCTGTTGCAG ATACGGTGGA
GAGGAGTTTG CAATCATTAT GCCACAAACA TCAAACGCTC AGGCTGTGCA TATTGCCAGT
AAACTTATAA CACTTATCGC AGCTCTTAAC ATTCCCAATA AAAAATCACC CACCAAAGCA
ATATTAACAG TGAGTATTGG TCTGGCTACT GTCTTACCCA GTCAAGAAAA TGATACAAGA
AGTCTCATTG CTAAAGCAGA TAAATCACTT TACAGAGCAA AAAAGAAGGG AAGAAATCGA
GTTGAGTCGA ACCTTTAG
 
Protein sequence
MSDSIEFLKS VLNTITDQIV VIDKNGDIKF VNHSWTEFGR DNDCQIKTEW IGINYLNGYD 
NTSGADADFG VTAVNGIRAV IIGQQPDFYL EYACHSPDEK RFFMMQVTPF IHQEVQFFVI
SHKNITNRKL AEEKVLHLSQ IDGLTGIANR RYFDETLENE WKRCARSKQP LTLAMIDVDH
FKLLNDTYGH QAGDNSLVMI GNLLKDLAQR PADLCCRYGG EEFAIIMPQT SNAQAVHIAS
KLITLIAALN IPNKKSPTKA ILTVSIGLAT VLPSQENDTR SLIAKADKSL YRAKKKGRNR
VESNL