| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1121 |
|---|
| Symbol | |
|---|
| ID | 4625041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 1404550 |
|---|
| End bp | 1405467 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 639796336 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_942557 |
|---|
| Protein GI | 119944877 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.323017 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGATT CAATTGAATT TCTTAAATCA GTACTTAATA CGATCACCGA CCAGATAGTT
GTTATAGATA AGAACGGTGA TATAAAATTT GTCAATCACA GCTGGACTGA GTTTGGCCGG
GATAATGATT GTCAAATAAA GACTGAATGG ATTGGCATAA ATTACCTTAA TGGATATGAT
AATACTTCTG GGGCAGACGC TGATTTCGGC GTTACGGCAG TAAATGGAAT TCGAGCCGTC
ATTATCGGGC AACAGCCTGA TTTTTACCTT GAATATGCTT GTCATAGTCC AGATGAAAAA
CGATTTTTCA TGATGCAGGT AACACCTTTT ATACATCAGG AAGTCCAATT TTTTGTCATC
TCTCATAAAA ATATTACTAA TCGAAAGTTA GCCGAGGAAA AAGTCCTTCA CTTATCCCAG
ATTGATGGTC TCACCGGTAT TGCCAATAGG CGATATTTTG ATGAGACCCT TGAAAATGAG
TGGAAGCGCT GTGCTCGTTC AAAACAACCA CTTACACTTG CCATGATTGA TGTTGATCAT
TTTAAGTTGC TCAATGACAC ATATGGGCAT CAAGCCGGTG ATAATAGTCT GGTAATGATT
GGCAATCTGC TTAAAGACTT AGCTCAAAGA CCTGCCGACC TCTGTTGCAG ATACGGTGGA
GAGGAGTTTG CAATCATTAT GCCACAAACA TCAAACGCTC AGGCTGTGCA TATTGCCAGT
AAACTTATAA CACTTATCGC AGCTCTTAAC ATTCCCAATA AAAAATCACC CACCAAAGCA
ATATTAACAG TGAGTATTGG TCTGGCTACT GTCTTACCCA GTCAAGAAAA TGATACAAGA
AGTCTCATTG CTAAAGCAGA TAAATCACTT TACAGAGCAA AAAAGAAGGG AAGAAATCGA
GTTGAGTCGA ACCTTTAG
|
|---|
| Protein sequence | MSDSIEFLKS VLNTITDQIV VIDKNGDIKF VNHSWTEFGR DNDCQIKTEW IGINYLNGYD
NTSGADADFG VTAVNGIRAV IIGQQPDFYL EYACHSPDEK RFFMMQVTPF IHQEVQFFVI
SHKNITNRKL AEEKVLHLSQ IDGLTGIANR RYFDETLENE WKRCARSKQP LTLAMIDVDH
FKLLNDTYGH QAGDNSLVMI GNLLKDLAQR PADLCCRYGG EEFAIIMPQT SNAQAVHIAS
KLITLIAALN IPNKKSPTKA ILTVSIGLAT VLPSQENDTR SLIAKADKSL YRAKKKGRNR
VESNL
|
|---|
| |